SMTL ID : 5tfu.3 (3 other biounits)

Structure of cytochrome P450 2D6 (CYP2D6) BACE1 inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: R.79, V.97, F.98, W.106, R.110, I.164, A.283, G.284, T.287, T.288, T.291, Q.342, I.347, V.352, H.354, L.377, P.413, F.414, S.415, R.419, C.421, L.422, G.423, L.426, A.427, E.430 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:F.98, A:I.164, A:A.283, A:I.347, A:V.352, A:L.377, A:F.414, A:F.414, A:L.422, A:L.426, A:A.427 Hydrogen bonds: A:F.98, A:S.415, A:S.415 Salt bridges: A:R.79, A:R.79, A:R.110, A:H.354, A:R.419 Metal complexes: A:C.421

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.169, H.236, D.248, E.251 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.236, A:D.248, A:E.251

1 x P6M: (4S,6R)-4-[2,4-difluoro-5-({[1-(trifluoromethyl)cyclopropyl]amino}methyl)phenyl]-4,6-dimethyl-5,6-dihydro-4H-1,3-thiazin-2-amine(Non-covalent)

P6M.3: 13 residues within 4Å: Chain A: L.88, F.98, L.99, A.187, L.191, E.194, Q.222, F.225, L.226, A.278, D.279, S.282, A.283 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.98, A:L.191, A:E.194, A:Q.222, A:F.225, A:L.226, A:A.278, A:A.283 Water bridges: A:E.194, A:R.199 Halogen bonds: A:D.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Butler, C.R. et al., Aminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging Gly230 without an Anilide Functionality. J. Med. Chem. (2017)

Release Date

2017-01-11

Peptides

Cytochrome P450 2D6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cytochrome P450 2D6

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