SMTL ID : 3th1.1 (1 other biounit)

Crystal structure of chlorocatechol 1,2-dioxygenase from Pseudomonas putida

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: Y.130, Y.164, H.188, H.190 Ligands: DTD.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:Y.130, A:Y.164, A:H.188, A:H.190 FE.7: 5 residues within 4Å: Chain B: Y.130, Y.164, H.188, H.190 Ligands: DTD.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:Y.130, B:Y.164, B:H.188, B:H.190

2 x DTD: DITHIANE DIOL(Non-covalent)

DTD.2: 10 residues within 4Å: Chain A: L.48, D.51, I.73, G.75, P.76, Y.164, I.166, R.185, H.188 Ligands: FE.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.164, A:R.185 DTD.8: 10 residues within 4Å: Chain B: L.48, D.51, I.73, G.75, P.76, Y.164, I.166, R.185, H.188 Ligands: FE.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.164, B:R.185

2 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)

3PH.3: 15 residues within 4Å: Chain A: A.32, G.33, Y.36, L.37, L.49, L.50, R.174, H.178 Chain B: V.5, V.8, I.12, V.13, L.50, L.54 Ligands: 3PH.9 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:A.32, A:Y.36, A:L.37, A:L.49, B:V.5, B:V.8, B:I.12, B:V.13, B:L.50, B:L.54 Salt bridges: A:R.174, A:H.178 3PH.9: 15 residues within 4Å: Chain A: V.5, V.8, I.12, V.13, L.50, L.54 Chain B: A.32, G.33, Y.36, L.37, L.49, L.50, R.174, H.178 Ligands: 3PH.3 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:A.32, B:Y.36, B:L.37, B:L.49, A:V.5, A:V.8, A:I.12, A:V.13, A:L.50, A:L.54 Salt bridges: B:R.174, B:H.178

4 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 1 residues within 4Å: Chain A: N.153 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain A: T.239, D.241 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain B: N.153 No protein-ligand interaction detected (PLIP) MG.11: 2 residues within 4Å: Chain B: T.239, D.241 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 5 residues within 4Å: Chain A: S.56, T.57, E.60, H.219 Chain B: R.17 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.17, A:H.219 Hydrophobic interactions: A:H.219 ACT.12: 5 residues within 4Å: Chain A: R.17 Chain B: S.56, T.57, E.60, H.219 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:H.219 Hydrogen bonds: B:T.57 Salt bridges: B:H.219, A:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rustiguel, J.K. et al., Crystal Structure of chlorocatechol 1,2-dioxygenase from Pseudomonas putida. To be Published

Release Date

2012-08-22

Peptides

Chlorocatechol 1,2-dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Chlorocatechol 1,2-dioxygenase

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