- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 5 residues within 4Å:- Chain A: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.243, A:G.261, A:N.263, H2O.1
CA.4: 4 residues within 4Å:- Chain A: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.295, A:D.295, A:D.303, H2O.3, H2O.12
CA.5: 1 residues within 4Å:- Ligands: CA.23
No protein-ligand interaction detected (PLIP)CA.11: 5 residues within 4Å:- Chain B: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.243, B:G.261, B:N.263, H2O.25
CA.12: 4 residues within 4Å:- Chain B: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.295, B:D.303, B:N.305, H2O.25, H2O.31
CA.21: 5 residues within 4Å:- Chain C: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.243, C:G.261, C:N.263, H2O.48
CA.22: 4 residues within 4Å:- Chain C: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.295, C:D.295, C:D.303, H2O.50, H2O.59
CA.23: 1 residues within 4Å:- Ligands: CA.5
No protein-ligand interaction detected (PLIP)CA.29: 5 residues within 4Å:- Chain D: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.243, D:G.261, D:N.263, H2O.72
CA.30: 4 residues within 4Å:- Chain D: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.295, D:D.303, D:N.305, H2O.72, H2O.78
- 4 x LVO: 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid(Non-covalent)
LVO.6: 14 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, R.75, W.98, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:W.98
- Hydrogen bonds: A:R.71, A:W.98, A:W.98, A:S.166, A:E.197, A:R.212, A:R.212, A:N.214, A:Y.321
- Water bridges: A:R.37, A:D.70, A:R.75, A:R.144, A:E.147, A:E.197, A:E.197
- Salt bridges: A:R.37, A:E.38, A:D.70, A:E.147, A:R.212, A:R.287
LVO.13: 15 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, R.75, W.98, I.142, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142
- Hydrogen bonds: B:R.71, B:W.98, B:W.98, B:S.166, B:E.197, B:R.212, B:R.212, B:N.214
- Water bridges: B:R.37, B:D.70, B:R.75, B:R.144, B:E.147, B:E.197, B:E.197
- Salt bridges: B:R.37, B:E.38, B:D.70, B:E.147, B:R.212, B:R.287
LVO.24: 14 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, R.75, W.98, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:W.98
- Hydrogen bonds: C:R.71, C:W.98, C:W.98, C:S.166, C:E.197, C:R.212, C:R.212, C:N.214
- Water bridges: C:R.37, C:D.70, C:R.75, C:R.144, C:E.197, C:E.197
- Salt bridges: C:R.37, C:E.38, C:D.70, C:E.147, C:R.212, C:R.287
LVO.31: 15 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, R.75, W.98, I.142, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
24 PLIP interactions:24 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142
- Hydrogen bonds: D:R.71, D:W.98, D:W.98, D:S.166, D:E.197, D:R.212, D:R.212, D:N.214, D:Y.321
- Water bridges: D:R.37, D:D.70, D:R.75, D:R.144, D:E.197, D:E.197, D:E.197
- Salt bridges: D:R.37, D:E.38, D:D.70, D:E.147, D:R.212, D:R.287
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 7 residues within 4Å:- Chain A: W.318, I.346, G.348, R.349, P.350, K.351, E.352
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:W.318, A:K.351
- Hydrogen bonds: A:I.346, A:K.351
ACT.8: 5 residues within 4Å:- Chain A: S.14, K.309, Q.310, T.371, V.372
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:Q.310
- Hydrogen bonds: A:T.371
- Water bridges: A:T.371, A:G.373, D:K.136
ACT.14: 7 residues within 4Å:- Chain B: W.318, I.346, G.348, R.349, P.350, K.351, E.352
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.318, B:K.351
- Hydrogen bonds: B:I.346, B:K.351
ACT.15: 6 residues within 4Å:- Chain A: N.128, G.129, I.130
- Chain B: Y.19, E.47, C.48
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:E.47
- Hydrogen bonds: B:Y.19, B:Y.19
ACT.18: 2 residues within 4Å:- Chain B: K.3, N.154
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.154
- Water bridges: B:K.3, B:K.3, B:N.154
- Salt bridges: B:K.3
ACT.25: 7 residues within 4Å:- Chain C: W.318, I.346, G.348, R.349, P.350, K.351, E.352
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:W.318, C:K.351
- Hydrogen bonds: C:I.346, C:K.351
ACT.26: 5 residues within 4Å:- Chain C: S.14, K.309, Q.310, T.371, V.372
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:Q.310
- Water bridges: C:T.371, C:G.373, B:K.136
ACT.32: 7 residues within 4Å:- Chain D: W.318, I.346, G.348, R.349, P.350, K.351, E.352
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:W.318, D:K.351
- Hydrogen bonds: D:I.346, D:K.351
ACT.33: 6 residues within 4Å:- Chain C: N.128, G.129, I.130
- Chain D: Y.19, E.47, C.48
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:E.47
- Hydrogen bonds: D:Y.19, D:Y.19
ACT.36: 2 residues within 4Å:- Chain D: K.3, N.154
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:N.154
- Water bridges: D:K.3, D:K.3, D:N.154
- Salt bridges: D:K.3
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.16: 8 residues within 4Å:- Chain B: N.128, G.129, I.130
- Chain C: Y.19, L.46, E.47, C.48, I.82
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:Y.19, C:C.48, C:C.48, B:N.128
- Water bridges: C:I.82
GOL.17: 5 residues within 4Å:- Chain B: P.12, V.13, S.14, W.294, I.308
No protein-ligand interaction detected (PLIP)GOL.34: 8 residues within 4Å:- Chain A: Y.19, L.46, E.47, C.48, I.82
- Chain D: N.128, G.129, I.130
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:C.48, A:C.48, D:N.128
- Water bridges: A:I.82
GOL.35: 5 residues within 4Å:- Chain D: P.12, V.13, S.14, W.294, I.308
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vavricka, C.J. et al., Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. Plos Pathog. (2011)
- Release Date
- 2011-11-16
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 4 x LVO: 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid(Non-covalent)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vavricka, C.J. et al., Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. Plos Pathog. (2011)
- Release Date
- 2011-11-16
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B