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SMTL ID : 3tnl.1
(1 other biounit)
1.45 Angstrom Crystal Structure of Shikimate 5-dehydrogenase from Listeria monocytogenes in Complex with Shikimate and NAD.
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.45 Å
Oligo State
homo-dimer
Ligands
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
25 residues within 4Å:
Chain A:
M.98
,
K.101
,
D.137
,
G.161
,
A.162
,
G.163
,
G.164
,
A.165
,
N.185
,
R.186
,
D.188
,
F.190
,
T.234
,
G.235
,
V.236
,
M.238
,
F.241
,
L.246
,
V.262
,
V.263
,
Y.264
,
G.285
,
M.288
,
M.289
Ligands:
SKM.2
17
PLIP interactions
:
17 interactions with chain A
Hydrogen bonds:
A:A.162
,
A:G.163
,
A:G.164
,
A:A.165
,
A:N.185
,
A:D.188
,
A:T.234
,
A:G.235
,
A:V.262
,
A:M.289
Water bridges:
A:A.166
,
A:R.186
,
A:R.186
,
A:R.186
,
A:R.186
pi-Cation interactions:
A:R.186
,
A:R.186
NAD.4:
23 residues within 4Å:
Chain B:
M.98
,
G.161
,
A.162
,
G.163
,
G.164
,
A.165
,
N.185
,
R.186
,
D.188
,
F.190
,
T.234
,
G.235
,
V.236
,
M.238
,
F.241
,
L.246
,
V.262
,
V.263
,
Y.264
,
G.285
,
M.288
,
M.289
,
Q.292
17
PLIP interactions
:
17 interactions with chain B
Hydrogen bonds:
B:A.162
,
B:G.163
,
B:G.164
,
B:A.165
,
B:N.185
,
B:R.186
,
B:D.188
,
B:T.234
,
B:G.235
,
B:V.262
,
B:M.289
Water bridges:
B:K.101
,
B:A.166
,
B:R.186
,
B:R.186
pi-Cation interactions:
B:R.186
,
B:R.186
1 x
SKM
:
(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID
(Non-covalent)
SKM.2:
13 residues within 4Å:
Chain A:
L.42
,
I.47
,
S.50
,
S.52
,
N.95
,
V.96
,
S.97
,
K.101
,
N.122
,
D.137
,
M.289
,
Q.292
Ligands:
NAD.1
10
PLIP interactions
:
10 interactions with chain A
Hydrogen bonds:
A:S.50
,
A:K.101
,
A:K.101
,
A:N.122
,
A:N.122
,
A:Q.292
,
A:Q.292
Water bridges:
A:Y.69
,
A:S.97
,
A:S.97
2 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.3:
2 residues within 4Å:
Chain A:
K.303
,
E.304
Ligand excluded by PLIP
CL.5:
4 residues within 4Å:
Chain B:
M.98
,
P.99
,
N.100
,
K.101
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Minasov, G. et al., 1.45 Angstrom Crystal Structure of Shikimate 5-dehydrogenase from Listeria monocytogenes in Complex with Shikimate and NAD. TO BE PUBLISHED
Release Date
2011-09-28
Peptides
Shikimate dehydrogenase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Shikimate dehydrogenase
Related Entries With Identical Sequence
3tnl.2
|
3toz.1
|
3toz.2
|
3toz.3
|
3toz.4
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