SMTL ID : 3tnl.2 (1 other biounit)

1.45 Angstrom Crystal Structure of Shikimate 5-dehydrogenase from Listeria monocytogenes in Complex with Shikimate and NAD.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: M.98, K.101, D.137, G.161, A.162, G.163, G.164, A.165, N.185, R.186, D.188, F.190, T.234, G.235, V.236, M.238, F.241, L.246, V.262, Y.264, G.285, M.288, M.289 Ligands: SKM.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:A.162, A:G.163, A:G.164, A:A.165, A:N.185, A:D.188, A:T.234, A:G.235, A:V.262, A:M.289 Water bridges: A:A.166, A:R.186, A:R.186, A:R.186, A:R.186 pi-Cation interactions: A:R.186, A:R.186 NAD.4: 22 residues within 4Å: Chain B: G.161, A.162, G.163, G.164, A.165, N.185, R.186, D.188, F.190, T.234, G.235, V.236, M.238, F.241, L.246, V.262, V.263, Y.264, G.285, M.288, M.289, Q.292 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:A.162, B:G.163, B:G.164, B:A.165, B:N.185, B:R.186, B:D.188, B:T.234, B:G.235, B:V.262 Water bridges: B:K.101, B:K.101, B:A.166, B:R.186, B:R.186, B:R.186 pi-Cation interactions: B:R.186, B:R.186

1 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.2: 13 residues within 4Å: Chain A: L.42, I.47, S.50, S.52, N.95, V.96, S.97, K.101, N.122, D.137, M.289, Q.292 Ligands: NAD.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.50, A:K.101, A:K.101, A:N.122, A:N.122, A:Q.292, A:Q.292 Water bridges: A:Y.69, A:S.97, A:S.97

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: K.303, E.304 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: M.98, P.99, N.100, K.101 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.45 Angstrom Crystal Structure of Shikimate 5-dehydrogenase from Listeria monocytogenes in Complex with Shikimate and NAD. TO BE PUBLISHED

Release Date

2011-09-28

Peptides

Shikimate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Shikimate dehydrogenase

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