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SMTL ID : 3tpq.1

Crystal structure of wild-type MAL RPEL domain in complex with five G-actins

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

hetero-5-1-mer

Ligands

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1:	23 residues within 4Å: Chain A: G.13, S.14, G.15, L.16, K.18, G.74, G.156, D.157, G.158, V.159, G.182, R.183, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336 Chain F: Q.24 Ligands: CA.2 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:S.14, A:G.15, A:L.16, A:L.16, A:G.156, A:D.157, A:D.157, A:D.157, A:G.158, A:V.159, A:V.159, A:K.213, A:E.214, A:G.302, A:T.303, F:Q.24 Salt bridges: A:K.18, A:K.18 pi-Stacking: A:Y.306
ATP.3:	21 residues within 4Å: Chain B: G.13, S.14, G.15, L.16, K.18, G.74, G.156, D.157, G.158, V.159, G.182, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336 Ligands: CA.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:S.14, B:G.15, B:L.16, B:L.16, B:G.156, B:D.157, B:D.157, B:D.157, B:G.158, B:V.159, B:V.159, B:K.213, B:E.214, B:G.302 Salt bridges: B:K.18, B:K.18 pi-Stacking: B:Y.306
ATP.5:	22 residues within 4Å: Chain C: G.13, S.14, G.15, L.16, K.18, S.155, G.156, D.157, G.158, V.159, G.182, R.183, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336 Ligands: CA.6 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:S.14, C:G.15, C:L.16, C:L.16, C:G.156, C:D.157, C:D.157, C:D.157, C:G.158, C:V.159, C:V.159, C:K.213, C:E.214, C:G.302 Salt bridges: C:K.18, C:K.18 pi-Stacking: C:Y.306
ATP.7:	23 residues within 4Å: Chain D: G.13, S.14, G.15, L.16, K.18, G.74, D.154, G.156, D.157, G.158, V.159, G.182, R.183, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336 Ligands: CA.8 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:S.14, D:G.15, D:L.16, D:L.16, D:G.156, D:D.157, D:D.157, D:G.158, D:V.159, D:V.159, D:K.213, D:E.214, D:G.302 Salt bridges: D:K.18, D:K.18 pi-Stacking: D:Y.306
ATP.9:	23 residues within 4Å: Chain E: G.13, S.14, G.15, L.16, K.18, G.74, Q.137, G.156, D.157, G.158, V.159, G.182, R.183, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336 Ligands: CA.10 18 PLIP interactions: 18 interactions with chain E Hydrogen bonds: E:S.14, E:G.15, E:L.16, E:L.16, E:G.156, E:D.157, E:D.157, E:D.157, E:G.158, E:V.159, E:V.159, E:K.213, E:E.214, E:G.302, E:T.303 Salt bridges: E:K.18, E:K.18 pi-Stacking: E:Y.306

5 x CA: CALCIUM ION(Non-covalent)

CA.2:	3 residues within 4Å: Chain A: D.11, Q.137 Ligands: ATP.1 No protein-ligand interaction detected (PLIP)
CA.4:	4 residues within 4Å: Chain B: K.18, Q.137, D.154 Ligands: ATP.3 No protein-ligand interaction detected (PLIP)
CA.6:	3 residues within 4Å: Chain C: D.11, Q.137 Ligands: ATP.5 No protein-ligand interaction detected (PLIP)
CA.8:	3 residues within 4Å: Chain D: Q.137, D.154 Ligands: ATP.7 No protein-ligand interaction detected (PLIP)
CA.10:	3 residues within 4Å: Chain E: Q.137, D.154 Ligands: ATP.9 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hirano, H. et al., Sensing actin dynamics: structural basis for G-actin-sensitive nuclear import of MAL. Biochem.Biophys.Res.Commun. (2011)

Release Date

2011-10-12

Peptides

Actin, alpha skeletal muscle: ABCDE
MAL: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
M

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

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NGLPV2D

Actin, alpha skeletal muscle

Toggle Identical (BC)

MAL

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