- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-pentamer
- Ligands
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 9 residues within 4Å:- Chain A: S.14, A.108, Q.137, G.156, D.157, G.158, V.159
- Ligands: ADP.1, MG.3
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.14, A:Q.137, A:Q.137, A:G.156, A:G.158, A:V.159, A:V.159
PO4.7: 9 residues within 4Å:- Chain B: S.14, A.108, Q.137, G.156, D.157, G.158, V.159
- Ligands: ADP.6, MG.8
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.14, B:Q.137, B:Q.137, B:G.156, B:G.158, B:V.159, B:V.159
PO4.11: 9 residues within 4Å:- Chain C: S.14, A.108, Q.137, G.156, D.157, G.158, V.159
- Ligands: ADP.10, MG.12
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:S.14, C:Q.137, C:Q.137, C:G.156, C:G.158, C:V.159, C:V.159
PO4.15: 9 residues within 4Å:- Chain D: S.14, A.108, Q.137, G.156, D.157, G.158, V.159
- Ligands: ADP.14, MG.16
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:S.14, D:Q.137, D:Q.137, D:G.156, D:G.158, D:V.159, D:V.159
PO4.19: 9 residues within 4Å:- Chain E: S.14, A.108, Q.137, G.156, D.157, G.158, V.159
- Ligands: ADP.18, MG.20
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:S.14, E:Q.137, E:Q.137, E:G.156, E:G.158, E:V.159, E:V.159
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: D.11, Q.137, D.154
- Ligands: ADP.1, PO4.2
No protein-ligand interaction detected (PLIP)MG.8: 5 residues within 4Å:- Chain B: D.11, Q.137, D.154
- Ligands: ADP.6, PO4.7
No protein-ligand interaction detected (PLIP)MG.12: 5 residues within 4Å:- Chain C: D.11, Q.137, D.154
- Ligands: ADP.10, PO4.11
No protein-ligand interaction detected (PLIP)MG.16: 5 residues within 4Å:- Chain D: D.11, Q.137, D.154
- Ligands: ADP.14, PO4.15
No protein-ligand interaction detected (PLIP)MG.20: 5 residues within 4Å:- Chain E: D.11, Q.137, D.154
- Ligands: ADP.18, PO4.19
No protein-ligand interaction detected (PLIP)- 5 x 9ZK: (4~{R},7~{R},10~{S},13~{S},15~{E},19~{S})-10-(4-azanylbutyl)-4-(4-hydroxyphenyl)-7-(1~{H}-indol-3-ylmethyl)-8,13,15,19-tetramethyl-1-oxa-5,8,11-triazacyclononadec-15-ene-2,6,9,12-tetrone(Non-covalent)
9ZK.4: 8 residues within 4Å:- Chain A: I.75, L.110, P.112, A.114, N.115, R.177, D.179
- Chain B: I.287
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.75, A:I.75, A:P.112, B:I.287
- Hydrogen bonds: A:D.179
9ZK.5: 20 residues within 4Å:- Chain A: T.194, R.196, G.197, Y.198, S.199, F.200, V.201, E.205, L.242, Q.246, V.247, I.248
- Chain B: I.75, L.110, P.112, A.114, N.115, R.177, D.179
- Chain C: I.287
13 PLIP interactions:8 interactions with chain A, 4 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: A:Y.198, A:F.200, A:L.242, A:Q.246, B:I.75, B:I.75, B:P.112, C:I.287
- Hydrogen bonds: A:G.197, A:S.199, A:S.199, A:S.199, B:D.179
9ZK.9: 20 residues within 4Å:- Chain B: T.194, R.196, G.197, Y.198, S.199, F.200, V.201, E.205, L.242, Q.246, V.247, I.248
- Chain C: I.75, L.110, P.112, A.114, N.115, R.177, D.179
- Chain D: I.287
13 PLIP interactions:8 interactions with chain B, 4 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: B:Y.198, B:F.200, B:L.242, B:Q.246, C:I.75, C:I.75, C:P.112, D:I.287
- Hydrogen bonds: B:G.197, B:S.199, B:S.199, B:S.199, C:D.179
9ZK.13: 20 residues within 4Å:- Chain C: T.194, R.196, G.197, Y.198, S.199, F.200, V.201, E.205, L.242, Q.246, V.247, I.248
- Chain D: I.75, L.110, P.112, A.114, N.115, R.177, D.179
- Chain E: I.287
13 PLIP interactions:1 interactions with chain E, 4 interactions with chain D, 8 interactions with chain C- Hydrophobic interactions: E:I.287, D:I.75, D:I.75, D:P.112, C:Y.198, C:F.200, C:L.242, C:Q.246
- Hydrogen bonds: D:D.179, C:G.197, C:S.199, C:S.199, C:S.199
9ZK.17: 19 residues within 4Å:- Chain D: T.194, R.196, G.197, Y.198, S.199, F.200, V.201, E.205, L.242, Q.246, V.247, I.248
- Chain E: I.75, L.110, P.112, A.114, N.115, R.177, D.179
12 PLIP interactions:8 interactions with chain D, 4 interactions with chain E- Hydrophobic interactions: D:Y.198, D:F.200, D:L.242, D:Q.246, E:I.75, E:I.75, E:P.112
- Hydrogen bonds: D:G.197, D:S.199, D:S.199, D:S.199, E:D.179
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pospich, S. et al., Structural Effects and Functional Implications of Phalloidin and Jasplakinolide Binding to Actin Filaments. Structure (2020)
- Release Date
- 2020-03-04
- Peptides
- Actin, alpha skeletal muscle: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
SMTL ID : 6t23.1
Cryo-EM structure of jasplakinolide-stabilized F-actin (aged)
Actin, alpha skeletal muscle
Toggle Identical (ABCDE)Related Entries With Identical Sequence
1h1v.1 | 1j6z.1 | 1kxp.1 | 1lot.1 | 1m8q.1 | 1ma9.1 | 1mvw.1 | 1nwk.1 | 1o18.1 | 1o19.1 | 1o1a.1 | 1o1b.1 | 1o1c.1 | 1o1d.1 | 1o1e.1 | 1o1f.1 | 1o1g.1 | 1qz5.1 | 1qz6.1 | 1rdw.1 | 1rfq.1 | 1s22.1 | 1wua.1 | 1y64.1 | 1yxq.1 | 2a3z.1 | 2a40.1 | 2a40.2 | 2a40.3 | 2a41.1 more...less...2a42.1 | 2a5x.1 | 2asm.1 | 2aso.1 | 2asp.1 | 2d1k.1 | 2ff3.1 | 2ff6.1 | 2fxu.1 | 2hmp.1 | 2pav.1 | 2q0r.1 | 2q0u.1 | 2q1n.1 | 2q1n.2 | 2q31.1 | 2q31.2 | 2q36.1 | 2q97.1 | 2q97.2 | 2vcp.1 | 2vcp.2 | 2y83.1 | 2zwh.1 | 3buz.1 | 3hbt.1 | 3j4k.1 | 3j8a.1 | 3jbi.1 | 3jbj.1 | 3jbk.1 | 3m1f.1 | 3m3n.1 | 3mfp.1 | 3mfp.2 | 3mfp.3 | 3sjh.1 | 3tpq.1 | 3u8x.1 | 3u8x.2 | 3u9d.1 | 3u9d.2 | 3u9z.1 | 3ue5.1 | 3ue5.2 | 3ue5.3 | 4a7f.1 | 4a7h.1 | 4a7l.1 | 4a7n.1 | 4gy2.1 | 4h03.1 | 4h0t.1 | 4h0v.1 | 4h0x.1 | 4h0y.1 | 4k41.1 | 4k42.1 | 4k42.2 | 4k42.3 | 4k42.4 | 4k43.1 | 4k43.2 | 4pl8.1 | 4v0u.6 | 4v0u.7 | 4v0u.8 | 4v0u.9 | 4v0u.10 | 5h53.1 | 5jlf.1 | 5mva.1 | 5mvy.1 | 5onv.1 | 5ooc.1 | 5ood.1 | 5ooe.1 | 5oof.1 | 5yu8.1 | 6c1d.1 | 6c1g.1 | 6c1h.1 | 6d8c.1 | 6djm.1 | 6djn.1 | 6djo.1 | 6fhl.1 | 6fm2.1 | 6kll.1 | 6kln.1 | 6kn7.1 | 6kn8.1 | 6rsw.1 | 6t1y.1 | 6t20.1 | 6t24.1 | 6t25.1 | 6upv.1 | 6upw.1 | 6yp9.1 | 7c2f.1 | 7c2f.2 | 7k20.1 | 7k21.1 | 7ko4.1 | 7ko5.1 | 7ko7.1 | 7kon.1 | 7kor.1 | 7nxv.1 | 7nxv.2 | 7nzm.1 | 7t5q.1 | 8a2r.1 | 8a2s.1 | 8a2t.1 | 8a2u.1 | 8a2y.1 | 8a2z.1 | 8bjh.1 | 8bji.1 | 8bjj.1 | 8bo1.1 | 8bo1.2 | 8br0.1 | 8br0.2 | 8br1.1 | 8br1.2 | 8dmx.1 | 8e9b.1 | 8of8.1 | 8ru0.1 | 8rv2.1 | 8syf.1 | 8uee.1 | 9fjo.1