SMTL ID : 3tpx.2 (2 other biounits)

Crystal structure of human MDM2 in complex with a trifluoromethylated D-peptide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: N.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.55 SO4.2: 1 residues within 4Å: Chain A: K.27 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.27

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: Q.48, H.49 Chain B: Y.4 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: E.71, H.72, R.73, K.74 Ligand excluded by PLIP

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 1 residues within 4Å: Chain A: R.73 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.73 ACT.6: 3 residues within 4Å: Chain A: F.31 Chain B: N.6, L.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.31 Salt bridges: A:K.27 ACT.7: 4 residues within 4Å: Chain A: K.7, P.8, L.9, N.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.9 Water bridges: A:L.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhan, C. et al., An Ultrahigh Affinity d-Peptide Antagonist Of MDM2. J.Med.Chem. (2012)

Release Date

2012-06-20

Peptides

E3 ubiquitin-protein ligase Mdm2: A
D-peptide inhibitor DPMI-delta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

E3 ubiquitin-protein ligase Mdm2

D-peptide inhibitor DPMI-delta

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