- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 11 residues within 4Å:- Chain A: K.220, L.221, V.222, H.227, Q.251, N.254, L.296, I.307, E.308, T.465
- Ligands: MG.5
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.220, A:V.222, A:H.227, A:Q.251, A:N.254, A:T.465
ADP.10: 19 residues within 4Å:- Chain B: K.135, K.177, G.182, G.183, G.184, R.185, M.187, E.219, K.220, L.221, V.222, H.227, Q.251, N.254, E.294, L.296, E.308, T.465
- Ligands: MG.12
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:G.182, B:G.182, B:G.184, B:E.219, B:K.220, B:V.222, B:H.227, B:Q.251, B:N.254, B:T.465
- Water bridges: B:K.135, B:G.183, B:N.310
- Salt bridges: B:K.135, B:K.135, B:K.177
ADP.17: 11 residues within 4Å:- Chain C: K.220, L.221, V.222, H.227, Q.251, N.254, L.296, I.307, E.308, T.465
- Ligands: MG.19
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:K.220, C:V.222, C:H.227, C:Q.251, C:N.254, C:T.465, C:T.465
ADP.24: 19 residues within 4Å:- Chain D: K.135, K.177, G.182, G.183, G.184, R.185, M.187, E.219, K.220, L.221, V.222, H.227, Q.251, N.254, E.294, L.296, E.308, T.465
- Ligands: MG.26
14 PLIP interactions:14 interactions with chain D- Hydrogen bonds: D:G.182, D:G.182, D:G.184, D:K.220, D:V.222, D:Q.251, D:N.254, D:E.308
- Water bridges: D:K.135, D:G.183, D:N.310
- Salt bridges: D:K.135, D:K.135, D:K.177
- 4 x ZN: ZINC ION(Non-covalent)
ZN.4: 6 residues within 4Å:- Chain A: R.559, D.560, K.729, H.758, H.760, Q.794
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.560, A:H.758, A:H.760, H2O.97
ZN.11: 5 residues within 4Å:- Chain B: D.560, K.729, H.758, H.760, Q.794
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.560, B:H.758, B:H.760, H2O.415
ZN.18: 6 residues within 4Å:- Chain C: R.559, D.560, K.729, H.758, H.760, Q.794
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.560, C:H.758, C:H.760, H2O.534
ZN.25: 5 residues within 4Å:- Chain D: D.560, K.729, H.758, H.760, Q.794
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.560, D:H.758, D:H.760, H2O.852
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 3 residues within 4Å:- Chain A: E.294, E.308
- Ligands: ADP.3
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.294, A:E.308
MG.6: 4 residues within 4Å:- Chain A: M.545, R.546, E.548, D.779
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:M.545, A:E.548, A:D.779, H2O.28, H2O.91
MG.12: 3 residues within 4Å:- Chain B: E.294, E.308
- Ligands: ADP.10
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.294, B:E.308, H2O.267
MG.14: 4 residues within 4Å:- Chain B: M.545, R.546, E.548, D.779
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:M.545, B:R.546, B:E.548, B:D.779, H2O.388
MG.19: 3 residues within 4Å:- Chain C: E.294, E.308
- Ligands: ADP.17
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.294, C:E.308
MG.20: 4 residues within 4Å:- Chain C: M.545, R.546, E.548, D.779
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:M.545, C:E.548, C:D.779, H2O.465, H2O.528
MG.26: 3 residues within 4Å:- Chain D: E.294, E.308
- Ligands: ADP.24
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.294, D:E.308, H2O.704
MG.28: 4 residues within 4Å:- Chain D: M.545, R.546, E.548, D.779
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:M.545, D:R.546, D:E.548, D:D.779, H2O.825
- 2 x COA: COENZYME A(Non-covalent)
COA.7: 13 residues within 4Å:- Chain A: R.438, R.440, R.480, Q.481, D.482, R.483, A.484, T.1042, L.1043, L.1065, N.1066
- Chain D: R.54, F.55
14 PLIP interactions:12 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:Q.481, A:Q.481, A:D.482, A:R.483, A:A.484, A:N.1066, D:R.54
- Water bridges: A:D.482, D:R.54
- Salt bridges: A:R.438, A:R.440, A:R.480, A:R.480, A:R.483
COA.21: 13 residues within 4Å:- Chain B: R.54, F.55
- Chain C: R.438, R.440, R.480, Q.481, D.482, R.483, A.484, T.1042, L.1043, L.1065, N.1066
13 PLIP interactions:2 interactions with chain B, 11 interactions with chain C- Hydrogen bonds: B:R.54, C:Q.481, C:Q.481, C:D.482, C:R.483, C:A.484, C:N.1066
- Water bridges: B:R.54
- Salt bridges: C:R.438, C:R.440, C:R.480, C:R.480, C:R.483
- 2 x BTI: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL(Non-covalent)
BTI.13: 8 residues within 4Å:- Chain B: V.257, R.364, T.366, E.368, D.410, P.411, N.445, K.1130
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:T.366
- Hydrogen bonds: B:N.445
- Water bridges: B:E.368
BTI.27: 8 residues within 4Å:- Chain D: V.257, R.364, T.366, E.368, D.410, P.411, N.445, K.1130
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:T.366
- Hydrogen bonds: D:N.445
- Water bridges: D:E.368
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lietzan, A.D. et al., Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli. Biochemistry (2011)
- Release Date
- 2011-10-19
- Peptides
- Pyruvate carboxylase protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 2 x COA: COENZYME A(Non-covalent)
- 2 x BTI: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lietzan, A.D. et al., Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli. Biochemistry (2011)
- Release Date
- 2011-10-19
- Peptides
- Pyruvate carboxylase protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B