SMTL ID : 3ty3.1

Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe bound to glycyl-glycyl-glycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x GGG: glycylglycylglycine(Non-covalent)

GGG.1: 11 residues within 4Å: Chain A: F.80, G.81, A.82, V.83, S.85, I.97, R.101, E.289, P.290, V.291, H.292 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:V.83, A:S.85, A:E.289, A:P.290 Water bridges: A:R.101, A:R.101, A:R.101, A:R.101, A:R.130, A:R.130 Salt bridges: A:R.101 GGG.5: 10 residues within 4Å: Chain B: G.81, A.82, V.83, S.85, I.97, R.101, E.289, P.290, V.291, H.292 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.83, B:S.85, B:E.289, B:P.290 Salt bridges: B:R.101

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: I.21, G.274, H.292, A.295, I.298, A.304, N.305, D.346 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.305 Water bridges: A:G.293 GOL.3: 7 residues within 4Å: Chain A: D.48, L.49, D.50, P.64, R.66, T.67, R.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.50, A:T.67, A:T.67, A:R.70, A:R.70 GOL.4: 4 residues within 4Å: Chain A: H.190, K.192, L.194, C.248 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.190, A:K.192 Water bridges: A:I.189, A:K.191, A:K.192, A:E.247 GOL.6: 6 residues within 4Å: Chain B: K.114, D.125, R.178, I.181, R.182, S.188 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.125, B:R.178, B:R.182, B:S.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bulfer, S.L. et al., Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe. Proteins (2012)

Release Date

2011-11-09

Peptides

Probable homoisocitrate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable homoisocitrate dehydrogenase

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