SMTL ID : 3ty4.1

Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: D.48, L.49, D.50, P.64, R.66, T.67, R.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.50, A:T.67, A:T.67, A:R.70, A:R.70 GOL.2: 5 residues within 4Å: Chain A: H.190, K.192, L.194, E.247, C.248 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.190, A:K.192, A:E.247 Water bridges: A:K.191, A:K.191 GOL.3: 7 residues within 4Å: Chain A: I.21, G.274, H.292, I.298, A.304, N.305, D.346 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.305, A:N.305 Water bridges: A:I.303, A:D.346 GOL.4: 5 residues within 4Å: Chain A: D.264, V.291 Chain B: D.236, S.237, Y.240 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:S.237, A:R.111 GOL.5: 7 residues within 4Å: Chain B: K.114, D.125, R.178, I.181, R.182, S.188 Ligands: GOL.7 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.178, B:R.178, B:R.182, B:S.188 Water bridges: B:K.114, B:D.125 GOL.6: 4 residues within 4Å: Chain B: I.174, S.177, E.318, F.319 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.177, B:E.318, B:E.318 Water bridges: B:E.173, B:E.173, B:E.173, B:S.177 GOL.7: 7 residues within 4Å: Chain B: P.112, K.114, V.127, R.178, E.318, Y.330 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.178 Water bridges: B:D.125 GOL.8: 3 residues within 4Å: Chain B: R.30, F.46, D.48 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.30, B:R.30, B:D.48 Water bridges: B:D.48 GOL.9: 4 residues within 4Å: Chain B: H.190, K.192, L.194, C.248 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.192 Water bridges: B:I.189, B:K.191, B:K.191, B:E.247 GOL.10: 7 residues within 4Å: Chain A: D.236, S.237, Y.240 Chain B: R.111, D.264, L.273, V.291 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.111, B:R.111, B:D.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bulfer, S.L. et al., Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe. Proteins (2012)

Release Date

2011-11-09

Peptides

Probable homoisocitrate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable homoisocitrate dehydrogenase

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