SMTL ID : 3tyf.2 (1 other biounit)

Crystal structure of a CD1d-lysophosphatidylcholine reactive iNKT TCR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-oligomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: E.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.200 GOL.2: 3 residues within 4Å: Chain A: F.193, N.194, S.196 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.196 GOL.3: 3 residues within 4Å: Chain A: S.131 Chain B: E.134, W.245 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:W.245, A:S.131 GOL.4: 6 residues within 4Å: Chain B: Q.38, D.40, S.86, H.87, T.88, S.89 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.88, B:S.89, B:S.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Sagaseta, J. et al., Lysophospholipid presentation by CD1d and recognition by a human Natural Killer T-cell receptor. Embo J. (2012)

Release Date

2012-04-25

Peptides

iNKT Cell Receptor Alpha Chain: A
iNKT Cell Receptor Beta Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

iNKT Cell Receptor Alpha Chain

iNKT Cell Receptor Beta Chain

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