SMTL ID : 3tyq.1 (1 other biounit)

SAR development and discovery of potent indole-based inhibitors of the hepatitis c virus NS5B polymerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HI4: 5-ethyl-1-(2-fluoro-5-nitrobenzyl)-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid(Covalent)

HI4.1: 15 residues within 4Å: Chain A: F.193, P.197, R.200, N.316, D.319, C.366, L.384, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, S.556 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.197, A:N.316, A:D.319, A:L.384, A:Y.415 Hydrogen bonds: A:Q.446, A:Y.448, A:S.556 Water bridges: A:Q.446, A:G.449, A:G.449, A:S.556 pi-Stacking: A:Y.448

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: R.505, V.530, R.531, T.532 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.531, A:T.532, A:T.532 Water bridges: A:R.505, A:R.505, A:R.505, A:R.505, A:R.505, A:R.505, A:R.505, A:T.532 Salt bridges: A:R.505 PO4.3: 1 residues within 4Å: Chain A: R.114 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.114, A:R.114 Salt bridges: A:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, K.X. et al., A Novel Class of Highly Potent Irreversible Hepatitis C Virus NS5B Polymerase Inhibitors. J.Med.Chem. (2012)

Release Date

2012-02-01

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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