SMTL ID : 3tyv.1 (1 other biounit)

SAR development and discovery of potent indole-based inhibitors of the hepatitis C virus NS5B polymerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.505, V.530, R.531, T.532 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.531, A:T.532, A:T.532 Water bridges: A:R.501, A:R.505 Salt bridges: A:R.505

1 x HI3: N-(cyclopropylsulfonyl)-1-(2,5-difluorobenzyl)-6-fluoro-5-methyl-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxamide(Non-covalent)

HI3.2: 17 residues within 4Å: Chain A: F.193, P.197, R.200, N.316, D.319, C.366, S.367, L.384, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, G.449, S.556 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.197, A:D.319, A:Y.415, A:Y.415 Hydrogen bonds: A:Q.446, A:Y.448 Water bridges: A:G.449, A:G.449 pi-Stacking: A:Y.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, K.X. et al., Structure-Activity Relationship (SAR) Development and Discovery of Potent Indole-Based Inhibitors of the Hepatitis C Virus (HCV) NS5B Polymerase. J.Med.Chem. (2012)

Release Date

2012-02-01

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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