SMTL ID : 3tzq.2 (1 other biounit)

Crystal structure of a short-chain type dehydrogenase/reductase from Mycobacterium marinum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: S.146, A.147, T.148, Y.153, P.189, G.190, L.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.146, A:Y.153 PEG.3: 5 residues within 4Å: Chain B: H.150, L.251, H.253 Chain D: L.251 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.253 PEG.4: 10 residues within 4Å: Chain A: A.215, S.248 Chain B: G.178, G.181, V.182, R.183, A.237, F.238, I.239, T.240 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.237

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.102, D.154 Chain C: R.261, V.264 Chain D: R.179 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain D Water bridges: A:D.154 Hydrogen bonds: D:R.179, D:R.179 GOL.5: 5 residues within 4Å: Chain B: S.146, T.148, P.189, G.190, L.191 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.153, B:G.190 Water bridges: B:R.196 GOL.7: 6 residues within 4Å: Chain C: S.146, T.148, Y.153, G.190, L.191, L.201 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.153 Water bridges: C:G.190 GOL.9: 6 residues within 4Å: Chain D: S.146, A.147, T.148, P.189, G.190, L.191 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.147, D:P.189 GOL.10: 6 residues within 4Å: Chain D: G.18, C.20, G.21, D.42, L.43, T.46 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.21, D:D.42

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: L.251, A.252 Chain B: R.171 Chain C: H.150 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.171 EDO.8: 3 residues within 4Å: Chain D: H.150, L.251 Ligands: PEG.3 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-10-05

Peptides

Short-chain type dehydrogenase/reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
E

C
H

D
G

Short-chain type dehydrogenase/reductase

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