SMTL ID : 3u0a.2 (2 other biounits)

Crystal structure of an Acyl-CoA thioesterase II TesB2 from Mycobacterium marinum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.177 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: Q.15, V.18, R.51, R.82 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain B: R.84, G.86, G.87, S.88, F.89 Ligands: NA.12 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: S.88 Chain B: R.275 Ligands: NA.4 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: L.13, E.14, Q.15, R.51 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain B: Q.15, V.18, Y.21, R.82 Chain C: H.99 Ligand excluded by PLIP SO4.10: 6 residues within 4Å: Chain A: K.168, H.254, K.256 Chain B: K.168, H.254, K.256 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain A: H.63, M.106, G.107 Chain B: H.63, M.106, G.107 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain C: R.177 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain C: Q.15, V.18, R.51, R.82 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain D: R.84, G.86, G.87, S.88, F.89 Ligands: NA.24 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain C: S.88 Chain D: R.275 Ligands: NA.16 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain D: L.13, E.14, Q.15, R.51 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain A: H.99 Chain D: Q.15, V.18, Y.21, R.82 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain C: K.168, H.254, K.256 Chain D: K.168, H.254, K.256 Ligand excluded by PLIP SO4.23: 6 residues within 4Å: Chain C: H.63, M.106, G.107 Chain D: H.63, M.106, G.107 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: G.230, F.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.230 GOL.15: 2 residues within 4Å: Chain C: G.230, F.231 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.230

6 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: G.87, S.88, F.89 Ligands: SO4.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.87, A:S.88, A:F.89 NA.5: 3 residues within 4Å: Chain A: V.50, V.53, P.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.53 NA.12: 3 residues within 4Å: Chain A: R.275 Chain B: S.88 Ligands: SO4.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.275, A:R.275 NA.16: 4 residues within 4Å: Chain C: G.87, S.88, F.89 Ligands: SO4.19 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.87, C:S.88, C:F.89 NA.17: 3 residues within 4Å: Chain C: V.50, V.53, P.55 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:V.53 NA.24: 3 residues within 4Å: Chain C: R.275 Chain D: S.88 Ligands: SO4.18 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:R.275, C:R.275, D:S.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-10-05

Peptides

Acyl-CoA thioesterase II TesB2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Acyl-CoA thioesterase II TesB2

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