SMTL ID : 3u0e.1

Crystal structure of beta-ketoacyl synthase from Brucella melitensis in complex with fragment 9320

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: N.315, P.316, E.363, S.409, N.410 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.410 Water bridges: A:K.349 NA.3: 1 residues within 4Å: Chain A: E.142 No protein-ligand interaction detected (PLIP) NA.5: 5 residues within 4Å: Chain B: N.315, P.316, E.363, S.409, N.410 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.410 Water bridges: B:K.349 NA.7: 1 residues within 4Å: Chain B: E.142 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.142

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: D.287, M.288 Chain B: F.88 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: F.88 Chain B: D.287, M.288 Ligand excluded by PLIP

2 x 07K: 8-methylquinolin-4-amine(Non-covalent)

07K.4: 7 residues within 4Å: Chain A: L.304, V.307, S.309, K.310, I.311, I.335, F.336 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.335, A:F.336, A:F.336 Hydrogen bonds: A:S.309, A:I.311 07K.8: 7 residues within 4Å: Chain B: L.304, V.307, S.309, K.310, I.311, I.335, F.336 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.335, B:F.336, B:F.336 Hydrogen bonds: B:S.309, B:I.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patterson, E.I. et al., Structural characterization of beta-ketoacyl ACP synthase I bound to platencin and fragment screening molecules at two substrate binding sites. Proteins (2020)

Release Date

2011-10-26

Peptides

Beta-ketoacyl synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta-ketoacyl synthase

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