SMTL ID : 3u1w.1 (1 other biounit)

Crystal structure of a Calcium binding protein (BDI_1975) from Parabacteroides distasonis ATCC 8503 at 2.00 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: N.251 No protein-ligand interaction detected (PLIP) CA.8: 1 residues within 4Å: Chain B: N.251 No protein-ligand interaction detected (PLIP)

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: S.80, F.81 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: Q.201, I.202 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: S.236, H.237, N.238, G.239 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: F.151, K.177, W.192 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: S.236, H.237, N.238, G.239 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: F.151, K.177, W.192 Ligands: EDO.14 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: S.210, A.211 Chain B: S.109, N.110, S.111 Ligand excluded by PLIP

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 5 residues within 4Å: Chain A: R.95, V.101, Y.116, K.125, D.158 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.101, A:Y.116 Water bridges: A:R.95, A:K.125 Salt bridges: A:R.95, A:K.125 ACT.7: 3 residues within 4Å: Chain A: E.46, T.48, K.61 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.61 Hydrogen bonds: A:T.48, A:T.48, A:K.61 ACT.12: 6 residues within 4Å: Chain B: R.95, V.101, Y.116, I.124, K.125, D.158 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:V.101, B:Y.116, B:I.124, B:D.158 Hydrogen bonds: B:D.158 Water bridges: B:R.95, B:Y.116, B:K.125 Salt bridges: B:R.95, B:K.125

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.13: 5 residues within 4Å: Chain B: E.46, T.47, T.48, K.61, Y.91 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.46, B:T.48 Water bridges: B:K.61, B:K.61 EDO.14: 6 residues within 4Å: Chain B: T.150, F.151, W.187, T.190, L.224 Ligands: CL.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.190, B:T.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Hypothetical PERIPLASMIC PROTEIN (BDI_1975) from Parabacteroides distasonis ATCC 8503 at 2.00 A resolution. To be published

Release Date

2012-01-25

Peptides

Hypothetical PERIPLASMIC PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical PERIPLASMIC PROTEIN

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