- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: F.151, K.177, W.192
- Ligands: EDO.11
Ligand excluded by PLIPCL.4: 4 residues within 4Å:- Chain A: S.236, H.237, N.238, G.239
Ligand excluded by PLIPCL.5: 3 residues within 4Å:- Chain A: S.80, F.81
- Chain B: Q.240
Ligand excluded by PLIPCL.6: 7 residues within 4Å:- Chain A: Q.108, S.109, N.110, S.111
- Chain B: S.210, A.211, I.252
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain B: F.151, K.177, W.192
- Ligands: EDO.23
Ligand excluded by PLIPCL.16: 4 residues within 4Å:- Chain B: S.236, H.237, N.238, G.239
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain A: Q.240
- Chain B: S.80, F.81
Ligand excluded by PLIPCL.18: 7 residues within 4Å:- Chain A: S.210, A.211, I.252
- Chain B: Q.108, S.109, N.110, S.111
Ligand excluded by PLIP- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 3 residues within 4Å:- Chain A: K.20, W.57, E.60
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:K.20
ACT.8: 6 residues within 4Å:- Chain A: R.95, V.101, Y.116, I.124, K.125, D.158
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:V.101, A:Y.116, A:I.124, A:D.158
- Hydrogen bonds: A:D.158
- Water bridges: A:R.95, A:R.95, A:K.125
- Salt bridges: A:R.95, A:K.125
ACT.19: 3 residues within 4Å:- Chain B: K.20, W.57, E.60
3 PLIP interactions:3 interactions with chain B- Water bridges: B:Y.21, B:Y.21
- Salt bridges: B:K.20
ACT.20: 6 residues within 4Å:- Chain B: R.95, V.101, Y.116, I.124, K.125, D.158
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:V.101, B:Y.116, B:I.124, B:D.158
- Hydrogen bonds: B:D.158
- Water bridges: B:R.95, B:Y.116, B:K.125
- Salt bridges: B:R.95, B:K.125
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 5 residues within 4Å:- Chain A: E.46, T.47, T.48, K.61, Y.91
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.48
- Water bridges: A:K.61
EDO.10: 6 residues within 4Å:- Chain A: Q.218, S.236, G.239, D.241
- Chain B: G.239
- Ligands: EDO.22
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.236, A:G.239
EDO.11: 6 residues within 4Å:- Chain A: T.150, F.151, W.187, T.190, L.224
- Ligands: CL.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.190
EDO.12: 4 residues within 4Å:- Chain A: N.122, Q.174, I.175, Y.176
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.122, A:Q.174, A:Y.176
EDO.21: 5 residues within 4Å:- Chain B: E.46, T.47, T.48, K.61, Y.91
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.48
- Water bridges: B:K.61
EDO.22: 6 residues within 4Å:- Chain A: G.239
- Chain B: Q.218, S.236, G.239, D.241
- Ligands: EDO.10
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.236, B:G.239
EDO.23: 6 residues within 4Å:- Chain B: T.150, F.151, W.187, T.190, L.224
- Ligands: CL.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.190, B:T.190
EDO.24: 4 residues within 4Å:- Chain B: N.122, Q.174, I.175, Y.176
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.122, B:Q.174, B:Y.176
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a Hypothetical PERIPLASMIC PROTEIN (BDI_1975) from Parabacteroides distasonis ATCC 8503 at 2.00 A resolution. To be published
- Release Date
- 2012-01-25
- Peptides
- Hypothetical PERIPLASMIC PROTEIN: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a Hypothetical PERIPLASMIC PROTEIN (BDI_1975) from Parabacteroides distasonis ATCC 8503 at 2.00 A resolution. To be published
- Release Date
- 2012-01-25
- Peptides
- Hypothetical PERIPLASMIC PROTEIN: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
C