SMTL ID : 3u6y.1

Crystal structure of ALBA2-DNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x DC- DC- DG- DG- DC: DNA (5'-D(*CP*CP*GP*GP*C)-3')(Non-functional Binders)

DC-DC-DG-DG-DC.1: 5 residues within 4Å: Ligands: DG-DG-DC-DC-DG.2, DG-DG-DC-DC-DG.2, DG-DG-DC-DC-DG.2, DG-DG-DC-DC-DG.2, DG-DG-DC-DC-DG.2 Protein-ligand interaction information (PLIP) not available

1 x DG- DG- DC- DC- DG: DNA (5'-D(*GP*GP*CP*CP*G)-3')(Non-functional Binders)

DG-DG-DC-DC-DG.2: 5 residues within 4Å: Ligands: DC-DC-DG-DG-DC.1, DC-DC-DG-DG-DC.1, DC-DC-DG-DG-DC.1, DC-DC-DG-DG-DC.1, DC-DC-DG-DG-DC.1 Protein-ligand interaction information (PLIP) not available

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: A.2, C.3, E.4, Q.34, K.65 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.3, A:E.4, A:E.4, A:Q.34 Salt bridges: A:K.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, T. et al., Crystal structure of archaeal chromatin protein Alba2-double-stranded DNA complex from Aeropyrum pernix K1. J.Biol.Chem. (2012)

Release Date

2012-02-22

Peptides

DNA/RNA-binding protein Alba 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

DNA/RNA-binding protein Alba 2

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