SMTL ID : 3u83.1

Crystal structure of nectin-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.1: 6 residues within 4Å: Chain A: Y.25, M.128, P.164, N.214, Y.215, H.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.216 PG6.2: 6 residues within 4Å: Chain B: Y.25, M.128, P.164, N.214, Y.215, H.216 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, N. et al., Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion. Nat Commun (2011)

Release Date

2012-03-21

Peptides

Poliovirus receptor-related protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Poliovirus receptor-related protein 1

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