SMTL ID : 3u9w.1

Structure of human Leukotriene A4 hydrolase in complex with inhibitor sc57461A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.293, H.297, E.316, Y.381 Ligands: 28P.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.293, A:H.297, A:E.316, A:E.316

8 x YB: YTTERBIUM (III) ION(Non-covalent)(Non-functional Binders)

YB.2: 2 residues within 4Å: Chain A: D.479 Ligands: ACT.9 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.479, A:D.479, H2O.3, H2O.5, ACT.9 YB.10: 1 residues within 4Å: Ligands: YB.11 No protein-ligand interaction detected (PLIP) YB.11: 2 residues within 4Å: Ligands: YB.10, YB.16 No protein-ligand interaction detected (PLIP) YB.12: 1 residues within 4Å: Chain A: D.173 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.173, H2O.31, H2O.31, H2O.31 YB.13: 3 residues within 4Å: Chain A: R.22, E.180 Ligands: IMD.17 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.180, A:E.180, H2O.9, H2O.16 YB.14: 1 residues within 4Å: Chain A: E.68 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.68, A:E.68, H2O.26 YB.15: 1 residues within 4Å: Chain A: E.588 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.588, A:E.588 YB.16: 2 residues within 4Å: Chain A: D.424 Ligands: YB.11 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: K.55, D.56, R.76, G.81, S.82 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: P.511, L.512, G.513 Ligand excluded by PLIP

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: G.342, G.345, E.346, N.349, E.499, A.502, Q.506 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.346, A:N.349, A:E.499 Water bridges: A:G.345, A:Q.503 IMD.6: 8 residues within 4Å: Chain A: S.286, L.287, S.494, H.495, N.498, N.529, E.531, I.532 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.494, A:N.529 IMD.17: 6 residues within 4Å: Chain A: R.22, C.23, E.157, S.159, I.186 Ligands: YB.13 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:C.23, A:E.157, A:S.159 Water bridges: A:R.22, A:R.22, A:S.159 pi-Cation interactions: A:R.22

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 8 residues within 4Å: Chain A: F.27, R.30, W.115, L.116, T.117, P.118, P.127, Y.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.30, A:R.30, A:Y.128

1 x 28P: N-[3-(4-benzylphenoxy)propyl]-N-methyl-beta-alanine(Non-covalent)

28P.8: 20 residues within 4Å: Chain A: Q.132, Q.134, A.135, Y.265, G.267, M.268, E.269, H.293, E.294, H.297, W.309, F.312, E.316, L.367, P.372, A.375, Y.376, P.380, Y.381 Ligands: ZN.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.135, A:Y.265, A:W.309, A:F.312, A:F.312, A:L.367, A:P.372, A:A.375, A:Y.376, A:Y.376, A:P.380 Salt bridges: A:E.269, A:H.293, A:H.297

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 3 residues within 4Å: Chain A: K.477, D.479 Ligands: YB.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.477 Water bridges: A:K.477

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olsson, U. et al., Structure of human Leukotriene A4 hydrolase in complex with inhibitor sc57461A. To be Published

Release Date

2012-10-24

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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