- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ADN: ADENOSINE(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 9 residues within 4Å:- Chain A: P.19, G.20, R.87, V.88, G.89, T.90, E.181
- Chain F: R.43
- Ligands: ADN.1
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain F- Hydrogen bonds: A:G.20, A:V.88, A:T.90
- Water bridges: A:D.21, A:D.21, F:R.43
- Salt bridges: A:R.87, F:R.43
SO4.3: 6 residues within 4Å:- Chain A: R.117, P.121, G.122
- Chain E: R.117
- Ligands: SO4.8, SO4.13
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:G.122, A:F.123
- Salt bridges: E:R.117
SO4.7: 9 residues within 4Å:- Chain B: P.19, G.20, R.87, V.88, G.89, T.90, E.181
- Chain E: R.43
- Ligands: ADN.6
8 PLIP interactions:2 interactions with chain E, 6 interactions with chain B- Water bridges: E:R.43, B:D.21, B:D.21
- Salt bridges: E:R.43, B:R.87
- Hydrogen bonds: B:G.20, B:V.88, B:T.90
SO4.8: 6 residues within 4Å:- Chain B: R.117, P.121, G.122
- Chain D: R.117
- Ligands: SO4.3, SO4.13
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:G.122, B:F.123
- Salt bridges: D:R.117
SO4.12: 9 residues within 4Å:- Chain C: P.19, G.20, R.87, V.88, G.89, T.90, E.181
- Chain D: R.43
- Ligands: ADN.11
8 PLIP interactions:2 interactions with chain D, 6 interactions with chain C- Water bridges: D:R.43, C:D.21, C:D.21
- Salt bridges: D:R.43, C:R.87
- Hydrogen bonds: C:G.20, C:V.88, C:T.90
SO4.13: 6 residues within 4Å:- Chain C: R.117, P.121, G.122
- Chain F: R.117
- Ligands: SO4.3, SO4.8
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:G.122, C:F.123
- Salt bridges: F:R.117
SO4.17: 9 residues within 4Å:- Chain C: R.43
- Chain D: P.19, G.20, R.87, V.88, G.89, T.90, E.181
- Ligands: ADN.16
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:G.20, D:V.88, D:T.90
- Water bridges: D:D.21, D:D.21, C:R.43
- Salt bridges: D:R.87, C:R.43
SO4.18: 6 residues within 4Å:- Chain B: R.117
- Chain D: R.117, P.121, G.122
- Ligands: SO4.23, SO4.28
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain D- Salt bridges: B:R.117
- Hydrogen bonds: D:G.122, D:F.123
SO4.22: 9 residues within 4Å:- Chain B: R.43
- Chain E: P.19, G.20, R.87, V.88, G.89, T.90, E.181
- Ligands: ADN.21
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain E- Water bridges: B:R.43, E:D.21, E:D.21
- Salt bridges: B:R.43, E:R.87
- Hydrogen bonds: E:G.20, E:V.88, E:T.90
SO4.23: 6 residues within 4Å:- Chain A: R.117
- Chain E: R.117, P.121, G.122
- Ligands: SO4.18, SO4.28
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:G.122, E:F.123
- Salt bridges: A:R.117
SO4.27: 9 residues within 4Å:- Chain A: R.43
- Chain F: P.19, G.20, R.87, V.88, G.89, T.90, E.181
- Ligands: ADN.26
8 PLIP interactions:6 interactions with chain F, 2 interactions with chain A- Hydrogen bonds: F:G.20, F:V.88, F:T.90
- Water bridges: F:D.21, F:D.21, A:R.43
- Salt bridges: F:R.87, A:R.43
SO4.28: 6 residues within 4Å:- Chain C: R.117
- Chain F: R.117, P.121, G.122
- Ligands: SO4.18, SO4.23
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain C- Hydrogen bonds: F:G.122, F:F.123
- Salt bridges: C:R.117
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 7 residues within 4Å:- Chain A: T.119, L.188, K.191
- Chain E: Y.173
- Chain F: Y.160, R.161, E.162
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:Y.173, F:Y.160, F:E.162
GOL.5: 6 residues within 4Å:- Chain A: S.2, N.74, E.75, Q.78, S.79
- Chain F: Y.160
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.79
GOL.9: 7 residues within 4Å:- Chain B: T.119, L.188, K.191
- Chain D: Y.173
- Chain E: Y.160, R.161, E.162
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:Y.160, E:E.162, D:Y.173
GOL.10: 6 residues within 4Å:- Chain B: S.2, N.74, E.75, Q.78, S.79
- Chain E: Y.160
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.79
GOL.14: 7 residues within 4Å:- Chain C: T.119, L.188, K.191
- Chain D: Y.160, R.161, E.162
- Chain F: Y.173
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:Y.160, D:E.162, F:Y.173
GOL.15: 6 residues within 4Å:- Chain C: S.2, N.74, E.75, Q.78, S.79
- Chain D: Y.160
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.79
GOL.19: 7 residues within 4Å:- Chain B: Y.173
- Chain C: Y.160, R.161, E.162
- Chain D: T.119, L.188, K.191
5 PLIP interactions:2 interactions with chain C, 2 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: C:Y.160, C:E.162
- Water bridges: D:T.119, D:T.119, B:Y.173
GOL.20: 6 residues within 4Å:- Chain C: Y.160
- Chain D: S.2, N.74, E.75, Q.78, S.79
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.79
- Water bridges: C:Y.160
GOL.24: 7 residues within 4Å:- Chain A: Y.173
- Chain B: Y.160, R.161, E.162
- Chain E: T.119, L.188, K.191
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: B:Y.160, B:E.162
- Water bridges: A:Y.173, E:T.119, E:T.119
GOL.25: 6 residues within 4Å:- Chain B: Y.160
- Chain E: S.2, N.74, E.75, Q.78, S.79
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:S.79
- Water bridges: B:Y.160
GOL.29: 7 residues within 4Å:- Chain A: Y.160, R.161, E.162
- Chain C: Y.173
- Chain F: T.119, L.188, K.191
5 PLIP interactions:2 interactions with chain F, 1 interactions with chain C, 2 interactions with chain A- Water bridges: F:T.119, F:T.119, C:Y.173
- Hydrogen bonds: A:Y.160, A:E.162
GOL.30: 6 residues within 4Å:- Chain A: Y.160
- Chain F: S.2, N.74, E.75, Q.78, S.79
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain A- Hydrogen bonds: F:S.79
- Water bridges: A:Y.160
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dessanti, P. et al., Structural basis of the substrate specificity of Bacillus cereus adenosine phosphorylase. Acta Crystallogr.,Sect.D (2012)
- Release Date
- 2012-02-29
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ADN: ADENOSINE(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dessanti, P. et al., Structural basis of the substrate specificity of Bacillus cereus adenosine phosphorylase. Acta Crystallogr.,Sect.D (2012)
- Release Date
- 2012-02-29
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A