SMTL ID : 3udg.2 (1 other biounit)

Structure of Deinococcus radiodurans SSB bound to ssDNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

3 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.1: 5 residues within 4Å: Chain A: P.51, Y.53, D.118, A.119, G.120 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.53, A:D.118, A:A.119 Hydrogen bonds: A:A.119 pi-Stacking: A:Y.53 TMP.2: 2 residues within 4Å: Chain A: Y.146, G.150 No protein-ligand interaction detected (PLIP) TMP.3: 4 residues within 4Å: Chain B: R.55, R.86, W.88 Chain C: T.5 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.88, B:W.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

George, N.P. et al., Structure and Cellular Dynamics of Deinococcus radiodurans Single-stranded DNA (ssDNA)-binding Protein (SSB)-DNA Complexes. J.Biol.Chem. (2012)

Release Date

2012-05-16

Peptides

Single-stranded DNA-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Single-stranded DNA-binding protein

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