SMTL ID : 3udq.1

Crystal Structure of BACE with Compound 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

monomer

Ligands

1 x 09E: (4S)-6-bromo-1,1-dioxido-3,4-dihydro-2H-thiochromen-4-yl (3S,5'R)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxylate(Non-covalent)

09E.1: 15 residues within 4Å: Chain A: L.34, D.36, G.38, Y.75, T.76, Q.77, F.112, W.119, I.122, I.130, R.132, Y.202, D.232, G.234, T.235 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.34, A:Y.75, A:F.112, A:F.112, A:W.119, A:I.122 Hydrogen bonds: A:D.36, A:Q.77, A:T.235 Water bridges: A:Q.77, A:Q.77, A:D.232 pi-Stacking: A:Y.75 Halogen bonds: A:I.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Efremov, I.V. et al., Discovery and optimization of a novel spiropyrrolidine inhibitor of {beta}-secretase (BACE1) through fragment-based drug design. J.Med.Chem. (2012)

Release Date

2012-04-18

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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