- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: E.146, D.148, D.156, H.161
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.146, A:D.148, A:D.156, A:H.161, H2O.1, H2O.1
MN.9: 4 residues within 4Å:- Chain B: E.146, D.148, D.156, H.161
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.146, B:D.148, B:D.156, B:H.161, H2O.2, H2O.2
MN.16: 4 residues within 4Å:- Chain C: E.146, D.148, D.156, H.161
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.146, C:D.148, C:D.156, C:H.161, H2O.4, H2O.4
MN.23: 4 residues within 4Å:- Chain D: E.146, D.148, D.156, H.161
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.146, D:D.148, D:D.156, D:H.161, H2O.6, H2O.6
- 4 x GAL: beta-D-galactopyranose(Non-covalent)
GAL.3: 10 residues within 4Å:- Chain A: A.107, D.108, G.125, G.126, F.150, N.152, G.236, L.237, S.238, Y.241
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.108, A:G.126, A:N.152, A:N.152, A:L.237
GAL.10: 10 residues within 4Å:- Chain B: A.107, D.108, G.125, G.126, F.150, N.152, G.236, L.237, S.238, Y.241
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.108, B:G.126, B:N.152, B:N.152, B:L.237
GAL.17: 10 residues within 4Å:- Chain C: A.107, D.108, G.125, G.126, F.150, N.152, G.236, L.237, S.238, Y.241
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.108, C:G.126, C:N.152, C:N.152, C:L.237
GAL.24: 10 residues within 4Å:- Chain D: A.107, D.108, G.125, G.126, F.150, N.152, G.236, L.237, S.238, Y.241
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:D.108, D:G.126, D:N.152, D:L.237
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 7 residues within 4Å:- Chain A: I.27, T.75, P.76, I.77, Q.78, W.226
- Chain C: N.38
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:N.38, A:Q.78, A:Q.78
EDO.5: 6 residues within 4Å:- Chain A: W.80, Q.141, T.220, S.221, V.222, L.223
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.222
EDO.6: 2 residues within 4Å:- Chain A: N.102, S.105
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.102, A:S.105, A:G.240
EDO.7: 6 residues within 4Å:- Chain A: A.65, G.66, G.236, L.237, S.238, K.239
No protein-ligand interaction detected (PLIP)EDO.13: 5 residues within 4Å:- Chain B: N.25, L.256
- Chain D: F.31, N.35, N.38
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:N.35, D:N.38, B:N.25
EDO.14: 3 residues within 4Å:- Chain B: A.65, G.66, L.237
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.65, B:L.237
EDO.18: 7 residues within 4Å:- Chain A: N.38
- Chain C: I.27, T.75, P.76, I.77, Q.78, W.226
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:Q.78, C:Q.78, A:N.38
EDO.19: 6 residues within 4Å:- Chain C: W.80, Q.141, T.220, S.221, V.222, L.223
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:V.222
EDO.20: 2 residues within 4Å:- Chain C: N.102, S.105
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.102, C:S.105, C:G.240
EDO.21: 6 residues within 4Å:- Chain C: A.65, G.66, G.236, L.237, S.238, K.239
No protein-ligand interaction detected (PLIP)EDO.27: 5 residues within 4Å:- Chain B: F.31, N.35, N.38
- Chain D: N.25, L.256
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:N.35, B:N.38, D:N.25
EDO.28: 3 residues within 4Å:- Chain D: A.65, G.66, L.237
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.65, D:L.237
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.11: 1 residues within 4Å:- Chain B: L.237
No protein-ligand interaction detected (PLIP)PEG.12: 4 residues within 4Å:- Chain B: E.183, N.184, P.205, S.206
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.184, B:S.206
- Water bridges: B:N.184
PEG.25: 1 residues within 4Å:- Chain D: L.237
No protein-ligand interaction detected (PLIP)PEG.26: 4 residues within 4Å:- Chain D: E.183, N.184, P.205, S.206
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.184, D:S.206
- Water bridges: D:N.184
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shetty, K.N. et al., Affinity of a galactose-specific legume lectin from Dolichos lablab to adenine revealed by X-ray cystallography. Iubmb Life (2013)
- Release Date
- 2012-11-14
- Peptides
- Legume lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x GAL: beta-D-galactopyranose(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shetty, K.N. et al., Affinity of a galactose-specific legume lectin from Dolichos lablab to adenine revealed by X-ray cystallography. Iubmb Life (2013)
- Release Date
- 2012-11-14
- Peptides
- Legume lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C