SMTL ID : 3uom.6 (5 other biounits)

Ca2+ complex of Human skeletal calsequestrin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

5 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 3 residues within 4Å: Chain A: M.238, W.242, W.299 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.242, A:W.242, A:W.242, A:W.242 MRD.2: 5 residues within 4Å: Chain A: D.275, N.276, T.277, E.278, N.279 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.278 Hydrogen bonds: A:E.278 MRD.6: 5 residues within 4Å: Chain A: A.271, D.275, A.336, E.337, E.340 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.271, A:D.275, A:A.336 Water bridges: A:A.336, A:A.336 MRD.7: 8 residues within 4Å: Chain A: L.36, H.38, F.51, E.54, E.55, D.93, S.94, F.110 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.36, A:H.38, A:D.93, A:F.110 Hydrogen bonds: A:E.55, A:D.93 MRD.8: 5 residues within 4Å: Chain A: D.13, R.14, V.15, I.16, N.17 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.16 Hydrogen bonds: A:D.13, A:N.17

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 5 residues within 4Å: Chain A: N.276, N.279, L.282, E.340, E.344 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.282, A:L.282 Hydrogen bonds: A:E.344 MPD.4: 5 residues within 4Å: Chain A: I.249, V.314, N.316, D.321, S.322 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.249 MPD.5: 7 residues within 4Å: Chain A: E.143, F.201, E.257, F.263, L.266, E.267, K.270 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.201, A:F.263, A:L.266, A:E.267, A:K.270 Hydrogen bonds: A:E.143, A:E.143 Water bridges: A:D.144

14 x CA: CALCIUM ION(Non-covalent)

CA.9: 3 residues within 4Å: Chain A: E.128, L.129, E.135 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.129, A:E.135, H2O.2 CA.10: 2 residues within 4Å: Chain A: D.306, S.308 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.306, A:D.306, A:S.308, H2O.6, H2O.7 CA.11: 2 residues within 4Å: Chain A: D.259, D.261 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.259, A:D.259, A:D.261, H2O.2, H2O.6 CA.12: 3 residues within 4Å: Chain A: E.109, S.111, D.113 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.113, A:D.113, H2O.3, H2O.7 CA.13: 3 residues within 4Å: Chain A: D.245, D.247, I.249 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.247, A:I.249, H2O.3, H2O.5, H2O.7 CA.14: 1 residues within 4Å: Chain A: V.103 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:V.103, H2O.5, H2O.5 CA.15: 4 residues within 4Å: Chain A: D.261, E.264, D.332, L.333 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.261, H2O.8 CA.16: 3 residues within 4Å: Chain A: N.17, V.18, D.80 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.18, A:D.80, A:D.80, H2O.8 CA.17: 2 residues within 4Å: Chain A: T.189, E.194 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.189, A:T.189, H2O.2, H2O.3, H2O.4 CA.18: 3 residues within 4Å: Chain A: D.210, P.212, E.217 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.210, A:E.217, H2O.2, H2O.2, H2O.6 CA.19: 2 residues within 4Å: Chain A: E.199, T.229 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.229, H2O.1, H2O.1, H2O.1, H2O.2 CA.20: 2 residues within 4Å: Chain A: E.337, E.340 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.337, A:E.340, H2O.1, H2O.3, H2O.3 CA.21: 2 residues within 4Å: Chain A: E.337, D.341 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.337, A:D.341, H2O.1, H2O.3, H2O.3 CA.22: 1 residues within 4Å: Chain A: D.345 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.345, H2O.1, H2O.1, H2O.2, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanchez, E.J. et al., High-capacity Ca2+ Binding of Human Skeletal Calsequestrin. J.Biol.Chem. (2012)

Release Date

2012-02-22

Peptides

Calsequestrin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Calsequestrin-1

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