SMTL ID : 5crd.2 (1 other biounit)

Wild-type human skeletal calsequestrin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: N.17, V.18, L.74, V.75, D.76, K.79, D.80 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.18, A:L.74, A:D.80, H2O.3 CA.2: 3 residues within 4Å: Chain A: E.199, T.229, T.277 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.199, A:T.229, A:T.277, A:T.277, H2O.8 CA.3: 4 residues within 4Å: Chain A: D.210, P.212, N.213, E.217 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.210, A:P.212, A:E.217, H2O.1, H2O.7 CA.4: 1 residues within 4Å: Chain A: T.189 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.189, A:T.189, H2O.5 CA.7: 7 residues within 4Å: Chain B: N.17, V.18, L.74, V.75, D.76, K.79, D.80 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:V.18, B:L.74, B:D.80, H2O.12 CA.8: 3 residues within 4Å: Chain B: E.199, T.229, T.277 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.199, B:T.229, B:T.277, B:T.277, H2O.17 CA.9: 4 residues within 4Å: Chain B: D.210, P.212, N.213, E.217 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.210, B:P.212, B:E.217, H2O.10, H2O.16 CA.10: 1 residues within 4Å: Chain B: T.189 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.189, B:T.189, H2O.14

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 8 residues within 4Å: Chain A: L.294, L.295 Chain B: P.7, E.8, Y.9, L.60, Q.63, V.64 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.294, B:L.60 MPD.6: 7 residues within 4Å: Chain A: W.242, Y.298, W.299, A.320 Chain B: L.4, F.6, P.7 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.4, B:F.6, A:W.242, A:W.242, A:A.320 MPD.11: 8 residues within 4Å: Chain A: P.7, E.8, Y.9, L.60, Q.63, V.64 Chain B: L.294, L.295 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.60, B:L.294 MPD.12: 7 residues within 4Å: Chain A: L.4, F.6, P.7 Chain B: W.242, Y.298, W.299, A.320 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.242, B:W.242, B:A.320, A:L.4, A:F.6 Hydrogen bonds: B:Y.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, K.M. et al., Characterization of Two Human Skeletal Calsequestrin Mutants Implicated in Malignant Hyperthermia and Vacuolar Aggregate Myopathy. J.Biol.Chem. (2015)

Release Date

2015-10-07

Peptides

Calsequestrin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Calsequestrin-1

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