SMTL ID : 3uyp.1

Crystal structure of the dengue virus serotype 4 envelope protein domain III in complex with the variable domains of Mab 4E11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.163, Y.164 Chain B: H.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.163, A:Y.164 Water bridges: A:G.165, A:G.165 GOL.2: 8 residues within 4Å: Chain A: Q.40, E.43, Y.96, Q.174, K.175, A.176, G.177, Q.178 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.43, A:Y.96, A:K.175, A:G.177, A:Q.178 Water bridges: A:Q.40 GOL.4: 7 residues within 4Å: Chain A: Q.173, K.181, P.195, R.197, F.198, D.217, D.218 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.173, A:K.181, A:K.181, A:R.197, A:D.218 Water bridges: A:K.181, A:G.193 GOL.5: 2 residues within 4Å: Chain A: A.55, N.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.56 Water bridges: A:D.53 GOL.6: 6 residues within 4Å: Chain A: K.39, K.64, F.65, K.68, G.90, D.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.39, A:K.64 Water bridges: A:K.39, A:K.64 GOL.7: 3 residues within 4Å: Chain A: R.150, T.210, N.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.212 Water bridges: A:R.150, A:S.199, A:N.212

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: T.59, K.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.59 Salt bridges: A:K.60

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.8: 4 residues within 4Å: Chain B: Y.5, T.6, M.7, K.40 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.7, B:K.40, B:K.40 Water bridges: B:M.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cockburn, J.J. et al., Mechanism of dengue virus broad cross-neutralization by a monoclonal antibody. Structure (2012)

Release Date

2012-02-22

Peptides

anti-dengue Mab 4E11: A
Envelope protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

anti-dengue Mab 4E11

Envelope protein

Related Entries With Identical Sequence