SMTL ID : 3uzq.1

Crystal structure of the dengue virus serotype 1 envelope protein domain III in complex with the variable domains of Mab 4E11

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Q.173, K.175, K.181, I.194, P.195, R.197, F.198, D.217, D.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.173, A:K.175, A:K.181, A:K.181, A:R.197, A:D.218

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: A.73, D.74, T.75 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.75, A:T.75 EDO.3: 3 residues within 4Å: Chain A: R.20, S.22, Y.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.20, A:S.22 Water bridges: A:S.22 EDO.4: 5 residues within 4Å: Chain A: Y.34, D.53, N.56, D.58 Chain B: E.17 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.34, A:Y.34, A:N.56, A:N.56 Water bridges: B:Q.29 EDO.5: 6 residues within 4Å: Chain A: Q.44, G.45, A.141, T.221, G.236, G.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.44, A:G.237 EDO.6: 5 residues within 4Å: Chain A: A.144, E.241, I.242, K.243, R.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.241, A:R.244, A:R.244 EDO.7: 3 residues within 4Å: Chain A: V.94, Q.109, G.110 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.109, A:Q.109 EDO.9: 7 residues within 4Å: Chain A: I.52, P.54, G.57, A.73, T.75 Ligands: EDO.2, EDO.10 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.57, A:A.73 EDO.10: 4 residues within 4Å: Chain A: P.54, A.55, T.75 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.75

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.8: 4 residues within 4Å: Chain A: R.20, T.72, Y.81, H.83 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.83 Salt bridges: A:H.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cockburn, J.J. et al., Mechanism of dengue virus broad cross-neutralization by a monoclonal antibody. Structure (2012)

Release Date

2012-02-22

Peptides

anti-dengue Mab 4E11: A
envelope protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

anti-dengue Mab 4E11

envelope protein

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