SMTL ID : 3v3q.1

Crystal Structure of Human Nur77 Ligand-binding Domain in Complex with Ethyl 2-[2,3,4 trimethoxy-6(1-octanoyl)phenyl]acetate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

2 x TMY: ethyl (2,3,4-trimethoxy-6-octanoylphenyl)acetate(Non-covalent)

TMY.1: 13 residues within 4Å: Chain A: E.91, S.92, A.93, F.94, L.95, E.96, R.214, C.217, T.218, L.221, I.242, F.243, T.246 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.95, A:L.95, A:R.214, A:T.246, A:T.246 Hydrogen bonds: A:L.95, A:E.96, A:E.96, A:T.246 TMY.2: 12 residues within 4Å: Chain A: H.23, L.24, P.28, Y.104, R.105, K.107, L.144, H.145, L.148, V.149, V.151 Ligands: GOL.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.28, A:Y.104, A:Y.104, A:Y.104, A:R.105, A:L.144, A:V.149 Hydrogen bonds: A:K.107 Water bridges: A:R.105

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: L.157, L.160, V.161, L.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.160 Water bridges: A:T.164 GOL.4: 8 residues within 4Å: Chain A: H.23, L.24, S.26, G.27, P.28, R.101, R.105 Ligands: TMY.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.24, A:P.28, A:R.101, A:R.105 GOL.5: 6 residues within 4Å: Chain A: G.77, E.80, R.174, E.177, L.178, R.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.77, A:R.174, A:L.178 GOL.6: 5 residues within 4Å: Chain B: H.23, L.24, G.27, P.28, R.105 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.28, B:R.105 Water bridges: B:R.105, B:R.105

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain B: S.64, R.101, R.105, C.116 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.101, B:R.101, B:R.105 Water bridges: B:R.105, B:C.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhan, Y. et al., The orphan nuclear receptor Nur77 regulates LKB1 localization and activates AMPK. Nat.Chem.Biol. (2012)

Release Date

2012-09-26

Peptides

Nuclear receptor subfamily 4 group A member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclear receptor subfamily 4 group A member 1

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