SMTL ID : 3v90.2 (1 other biounit)

Structure of T82M glycogenin mutant truncated at residue 270

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: H.49, R.50, A.129, N.130 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.130 GOL.2: 5 residues within 4Å: Chain A: D.150, N.188, T.189, N.192 Chain B: F.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.188 Water bridges: A:D.150, A:A.195 GOL.4: 4 residues within 4Å: Chain B: H.49, R.50, A.129, N.130 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.130 GOL.5: 5 residues within 4Å: Chain A: F.224 Chain B: D.150, N.188, T.189, N.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.188 Water bridges: B:D.150, B:A.195 GOL.7: 4 residues within 4Å: Chain C: H.49, R.50, A.129, N.130 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.49, C:N.130 GOL.8: 5 residues within 4Å: Chain C: D.150, N.188, T.189, N.192 Chain D: F.224 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.188 Water bridges: C:D.150, C:D.150, C:A.195 GOL.10: 4 residues within 4Å: Chain D: H.49, R.50, A.129, N.130 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.49, D:N.130 GOL.11: 5 residues within 4Å: Chain C: F.224 Chain D: D.150, N.188, T.189, N.192 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.188 Water bridges: D:D.150, D:D.150, D:A.195

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: D.198, I.199 Ligands: CL.6, CL.9, CL.12 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: D.198, I.199 Ligands: CL.3, CL.9, CL.12 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain C: D.198, I.199 Ligands: CL.3, CL.6, CL.12 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain D: D.198, I.199 Ligands: CL.3, CL.6, CL.9 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carrizo, M.E. et al., Structural and biochemical insight into glycogenin inactivation by the glycogenosis-causing T82M mutation. Febs Lett. (2012)

Release Date

2012-01-25

Peptides

Glycogenin-1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Glycogenin-1

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