- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 5 residues within 4Å:- Chain A: D.198, I.199
- Ligands: CL.6, CL.10, CL.14
Ligand excluded by PLIPCL.6: 5 residues within 4Å:- Chain B: D.198, I.199
- Ligands: CL.2, CL.10, CL.14
Ligand excluded by PLIPCL.10: 5 residues within 4Å:- Chain C: D.198, I.199
- Ligands: CL.2, CL.6, CL.14
Ligand excluded by PLIPCL.14: 5 residues within 4Å:- Chain D: D.198, I.199
- Ligands: CL.2, CL.6, CL.10
Ligand excluded by PLIP- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 4 residues within 4Å:- Chain A: D.122, D.124, H.232
- Ligands: UPG.4
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.122, A:D.124, A:D.124, A:H.232
MN.7: 4 residues within 4Å:- Chain B: D.122, D.124, H.232
- Ligands: UPG.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.122, B:D.124, B:D.124, B:H.232
MN.11: 4 residues within 4Å:- Chain C: D.122, D.124, H.232
- Ligands: UPG.12
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.122, C:D.124, C:D.124, C:H.232
MN.15: 4 residues within 4Å:- Chain D: D.122, D.124, H.232
- Ligands: UPG.16
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.122, D:D.124, D:D.124, D:H.232
- 4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
UPG.4: 21 residues within 4Å:- Chain A: L.29, T.30, T.31, N.32, Y.35, V.102, K.106, D.122, A.123, D.124, D.145, N.153, S.154, G.155, D.183, Q.184, H.232, L.234, G.235, K.238
- Ligands: MN.3
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:V.102
- Hydrogen bonds: A:L.29, A:T.31, A:T.31, A:T.31, A:N.32, A:Y.35, A:Y.35, A:K.106, A:A.123, A:D.124, A:D.124, A:N.153, A:S.154, A:Q.184, A:Q.184, A:G.235
- Salt bridges: A:H.232, A:K.238, A:K.238
- pi-Stacking: A:Y.35
UPG.8: 21 residues within 4Å:- Chain B: L.29, T.30, T.31, N.32, Y.35, V.102, K.106, D.122, A.123, D.124, D.145, N.153, S.154, G.155, D.183, Q.184, H.232, L.234, G.235, K.238
- Ligands: MN.7
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:V.102
- Hydrogen bonds: B:L.29, B:T.31, B:T.31, B:T.31, B:N.32, B:Y.35, B:Y.35, B:K.106, B:A.123, B:D.124, B:D.124, B:N.153, B:S.154, B:Q.184, B:Q.184, B:G.235
- Salt bridges: B:H.232, B:K.238, B:K.238
- pi-Stacking: B:Y.35
UPG.12: 21 residues within 4Å:- Chain C: L.29, T.30, T.31, N.32, Y.35, V.102, K.106, D.122, A.123, D.124, D.145, N.153, S.154, G.155, D.183, Q.184, H.232, L.234, G.235, K.238
- Ligands: MN.11
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:V.102
- Hydrogen bonds: C:L.29, C:T.31, C:T.31, C:N.32, C:Y.35, C:K.106, C:A.123, C:D.124, C:D.124, C:S.154, C:Q.184, C:Q.184, C:G.235
- Salt bridges: C:H.232, C:K.238, C:K.238
- pi-Stacking: C:Y.35
UPG.16: 21 residues within 4Å:- Chain D: L.29, T.30, T.31, N.32, Y.35, V.102, K.106, D.122, A.123, D.124, D.145, N.153, S.154, G.155, D.183, Q.184, H.232, L.234, G.235, K.238
- Ligands: MN.15
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:V.102
- Hydrogen bonds: D:L.29, D:T.31, D:T.31, D:N.32, D:Y.35, D:K.106, D:A.123, D:D.124, D:D.124, D:S.154, D:Q.184, D:Q.184, D:G.235
- Salt bridges: D:H.232, D:K.238, D:K.238
- pi-Stacking: D:Y.35
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carrizo, M.E. et al., Structural and biochemical insight into glycogenin inactivation by the glycogenosis-causing T82M mutation. Febs Lett. (2012)
- Release Date
- 2012-01-25
- Peptides
- Glycogenin-1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carrizo, M.E. et al., Structural and biochemical insight into glycogenin inactivation by the glycogenosis-causing T82M mutation. Febs Lett. (2012)
- Release Date
- 2012-01-25
- Peptides
- Glycogenin-1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A