SMTL ID : 3v9j.1

Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with sulfate ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.347, S.349, T.511, G.512, S.513, F.520 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.349, A:S.349, A:G.512, A:S.513 Water bridges: A:E.165, A:S.513 SO4.2: 3 residues within 4Å: Chain A: K.233, S.235, D.236 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.236, A:D.236 Water bridges: A:F.210, A:K.233, A:K.233, A:K.233 Salt bridges: A:K.233 SO4.5: 6 residues within 4Å: Chain B: K.347, S.349, T.511, G.512, S.513, F.520 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.349, B:G.512, B:S.513 Water bridges: B:S.349 SO4.6: 2 residues within 4Å: Chain A: R.558 Chain B: R.374 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.558, B:R.374 SO4.7: 2 residues within 4Å: Chain A: R.374 Chain B: R.558 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.558, A:R.374 SO4.8: 3 residues within 4Å: Chain B: K.233, S.235, D.236 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.236 Water bridges: B:S.208, B:K.233, B:K.233, B:S.235 Salt bridges: B:K.233

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: Q.420, C.421, N.422, Y.428, E.430 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.428, A:E.430 Water bridges: A:C.421, A:N.422 GOL.4: 3 residues within 4Å: Chain A: R.408, S.409, P.411 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srivastava, D. et al., The Three-Dimensional Structural Basis of Type II Hyperprolinemia. J.Mol.Biol. (2012)

Release Date

2012-05-02

Peptides

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

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