SMTL ID : 3v9k.1

Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with the product glutamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: Q.420, C.421, N.422, Y.428, E.430 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.428, A:E.430 GOL.2: 3 residues within 4Å: Chain A: R.408, S.409, P.411 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.408

2 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.3: 10 residues within 4Å: Chain A: N.211, F.212, I.215, K.347, C.348, S.349, T.511, G.512, S.513, F.520 15 PLIP interactions: 3 Ligand-Ligand interactions, 12 interactions with chain A Hydrogen bonds: E.3, A:N.211, A:C.348, A:S.349, A:S.349, A:G.512, A:S.513, A:S.513, A:S.513 Water bridges: E.3, E.3 Hydrophobic interactions: A:F.212, A:I.215, A:F.520, A:F.520 GLU.4: 10 residues within 4Å: Chain B: N.211, F.212, I.215, K.347, C.348, S.349, T.511, G.512, S.513, F.520 14 PLIP interactions: 11 interactions with chain B, 3 Ligand-Ligand interactions Hydrophobic interactions: B:F.212, B:I.215, B:F.520, B:F.520 Hydrogen bonds: B:N.211, B:C.348, B:S.349, B:G.512, B:S.513, B:S.513, B:S.513, E.4 Water bridges: E.4, E.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srivastava, D. et al., The Three-Dimensional Structural Basis of Type II Hyperprolinemia. J.Mol.Biol. (2012)

Release Date

2012-05-02

Peptides

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

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