- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: N.104, N.107, G.136, A.152, A.153
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.107, A:G.136, A:A.152
NA.6: 5 residues within 4Å:- Chain B: N.104, N.107, G.136, A.152, A.153
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.107, B:N.107, B:G.136
NA.10: 5 residues within 4Å:- Chain C: N.104, N.107, G.136, A.152, A.153
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.107, C:G.136, C:A.152
NA.14: 5 residues within 4Å:- Chain D: N.104, N.107, G.136, A.152, A.153
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.107, D:G.136, D:G.136
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
BGC.3: 14 residues within 4Å:- Chain A: A.65, G.66, Y.67, P.79, N.80, N.104, D.105, A.106, G.133, L.134, G.135, E.154, H.157, E.176
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:N.104, A:N.104, A:E.154, A:E.154
- Water bridges: A:N.80, A:N.80, A:N.80, A:T.129, A:G.133, A:G.133, A:G.133
- Salt bridges: A:H.157
BGC.7: 14 residues within 4Å:- Chain B: A.65, G.66, Y.67, P.79, N.80, N.104, D.105, A.106, G.133, L.134, G.135, E.154, H.157, E.176
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:N.104, B:N.104, B:E.154, B:E.154
- Water bridges: B:N.80, B:N.80, B:N.80, B:T.129, B:G.133, B:G.133, B:G.133
- Salt bridges: B:H.157
BGC.11: 14 residues within 4Å:- Chain C: A.65, G.66, Y.67, P.79, N.80, N.104, D.105, A.106, G.133, L.134, G.135, E.154, H.157, E.176
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:N.104, C:N.104, C:E.154, C:E.154
- Water bridges: C:N.80, C:N.80, C:N.80, C:T.129, C:G.133, C:G.133, C:G.133
- Salt bridges: C:H.157
BGC.15: 14 residues within 4Å:- Chain D: A.65, G.66, Y.67, P.79, N.80, N.104, D.105, A.106, G.133, L.134, G.135, E.154, H.157, E.176
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:N.104, D:N.104, D:E.154, D:E.154
- Water bridges: D:N.80, D:N.80, D:N.80, D:T.129, D:G.133, D:G.133, D:G.133
- Salt bridges: D:H.157
- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.4: 17 residues within 4Å:- Chain A: G.10, G.11, T.12, K.13, G.131, T.132, G.181, R.182, L.184, V.185, G.215, K.216, S.219, G.260, G.261, V.262, E.265
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:D.8, A:G.10, A:G.11, A:T.12, A:K.13, A:K.13, A:T.132, A:T.132, A:G.215, A:S.219, A:G.261, A:E.265
- Water bridges: A:G.10, A:G.133, A:G.133, A:K.216, A:K.216, A:V.262, A:V.262
- Salt bridges: A:K.13
ANP.8: 17 residues within 4Å:- Chain B: G.10, G.11, T.12, K.13, G.131, T.132, G.181, R.182, L.184, V.185, G.215, K.216, S.219, G.260, G.261, V.262, E.265
20 PLIP interactions:20 interactions with chain B- Hydrogen bonds: B:D.8, B:G.10, B:G.11, B:T.12, B:K.13, B:K.13, B:T.132, B:T.132, B:G.215, B:S.219, B:G.261, B:E.265
- Water bridges: B:G.10, B:G.133, B:G.133, B:K.216, B:K.216, B:V.262, B:V.262
- Salt bridges: B:K.13
ANP.12: 17 residues within 4Å:- Chain C: G.10, G.11, T.12, K.13, G.131, T.132, G.181, R.182, L.184, V.185, G.215, K.216, S.219, G.260, G.261, V.262, E.265
23 PLIP interactions:23 interactions with chain C- Hydrogen bonds: C:D.8, C:G.10, C:G.11, C:T.12, C:T.12, C:K.13, C:K.13, C:T.132, C:T.132, C:G.215, C:S.219, C:G.261, C:E.265, C:E.265
- Water bridges: C:G.10, C:G.133, C:G.133, C:K.216, C:K.216, C:V.262, C:V.262, C:D.264
- Salt bridges: C:K.13
ANP.16: 17 residues within 4Å:- Chain D: G.10, G.11, T.12, K.13, G.131, T.132, G.181, R.182, L.184, V.185, G.215, K.216, S.219, G.260, G.261, V.262, E.265
23 PLIP interactions:23 interactions with chain D- Hydrogen bonds: D:D.8, D:G.10, D:G.11, D:T.12, D:T.12, D:K.13, D:K.13, D:T.132, D:T.132, D:G.215, D:S.219, D:G.261, D:E.265, D:E.265
- Water bridges: D:G.10, D:G.133, D:G.133, D:K.216, D:K.216, D:V.262, D:V.262, D:D.264
- Salt bridges: D:K.13
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miyazono, K. et al., Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus. J.Bacteriol. (2012)
- Release Date
- 2011-12-07
- Peptides
- Glucokinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miyazono, K. et al., Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus. J.Bacteriol. (2012)
- Release Date
- 2011-12-07
- Peptides
- Glucokinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A