SMTL ID : 3vnr.1

Co-crystal structure of NRPS adenylation protein CytC1 with aminobutyric acid and AMP from streptomyces

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: G.301, E.302, K.303, N.325, G.326, Y.327, G.328, I.329, T.330, I.353, D.421, Y.433, R.436, K.527 Ligands: ABA.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.301, A:N.325, A:G.326, A:G.328, A:T.330, A:T.330, A:T.330, A:D.421, A:R.436 Water bridges: A:T.183, A:T.183, A:D.228, A:E.302, A:L.304, A:K.527 Salt bridges: A:K.527 pi-Stacking: A:Y.327, A:Y.327

1 x ABA: ALPHA-AMINOBUTYRIC ACID(Non-functional Binders)

ABA.2: 9 residues within 4Å: Chain A: D.228, F.229, G.300, G.301, G.326, G.328, V.334, F.335 Ligands: AMP.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.229, A:V.334, A:F.335 Hydrogen bonds: A:G.301, A:G.326, A:G.328, A:G.328 Water bridges: A:D.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ueki, M. et al., Substrate recognition mechanism of NRPS adenylation protein from Streptomyces. To be Published

Release Date

2013-01-23

Peptides

NRPS adenylation protein CytC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NRPS adenylation protein CytC1

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