SMTL ID : 3vns.1

Co-crystal structure of NRPS adenylation protein CytC1 with D-valine and AMP from streptomyces

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 16 residues within 4Å: Chain A: T.183, G.301, E.302, K.303, N.325, G.326, Y.327, G.328, I.329, T.330, I.353, D.421, Y.433, R.436, K.527 Ligands: DVA.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.183, A:G.301, A:G.326, A:G.328, A:T.330, A:T.330, A:D.421, A:R.436, A:K.527 Water bridges: A:E.302, A:N.325, A:T.419, A:T.419, A:R.436 Salt bridges: A:K.527 pi-Stacking: A:Y.327, A:Y.327

1 x DVA: D-VALINE(Non-covalent)

DVA.2: 11 residues within 4Å: Chain A: F.227, D.228, F.229, G.301, G.328, I.329, T.330, V.334, F.335, K.527 Ligands: AMP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.227, A:F.229, A:F.335 Hydrogen bonds: A:T.330, A:V.334 Salt bridges: A:K.527

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ueki, M. et al., Substrate recognition mechanism of NRPS adenylation protein from Streptomyces. to be published

Release Date

2013-01-23

Peptides

NRPS adenylation protein CytC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NRPS adenylation protein CytC1

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