SMTL ID : 3vvb.1

Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE from Staphylococcus aureus in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 24 residues within 4Å: Chain A: G.32, T.34, G.35, S.36, F.37, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, L.143, S.144, T.145, K.159, Y.185, G.186, N.187, V.188 Chain D: K.61 26 PLIP interactions: 24 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:Y.185, A:Y.185 Hydrogen bonds: A:G.32, A:T.34, A:T.34, A:T.34, A:S.36, A:F.37, A:S.57, A:R.58, A:D.59, A:K.62, A:D.81, A:V.82, A:A.101, A:A.103, A:K.105, A:K.159, A:V.188, D:K.61 Salt bridges: A:R.58, A:K.62, A:K.105, A:K.105, D:K.61 pi-Cation interactions: A:R.58 NAP.2: 24 residues within 4Å: Chain B: G.32, T.34, G.35, S.36, F.37, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, L.143, S.144, T.145, K.159, Y.185, G.186, N.187, V.188 Chain F: K.61 26 PLIP interactions: 24 interactions with chain B, 2 interactions with chain F Hydrophobic interactions: B:Y.185, B:Y.185 Hydrogen bonds: B:G.32, B:T.34, B:T.34, B:T.34, B:S.36, B:F.37, B:S.57, B:R.58, B:D.59, B:K.62, B:D.81, B:V.82, B:A.101, B:A.103, B:K.105, B:K.159, B:V.188, F:K.61 Salt bridges: B:R.58, B:K.62, B:K.105, B:K.105, F:K.61 pi-Cation interactions: B:R.58 NAP.3: 24 residues within 4Å: Chain C: G.32, T.34, G.35, S.36, F.37, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, L.143, S.144, T.145, K.159, Y.185, G.186, N.187, V.188 Chain E: K.61 26 PLIP interactions: 24 interactions with chain C, 2 interactions with chain E Hydrophobic interactions: C:Y.185, C:Y.185 Hydrogen bonds: C:G.32, C:T.34, C:T.34, C:T.34, C:S.36, C:F.37, C:S.57, C:R.58, C:D.59, C:K.62, C:D.81, C:V.82, C:A.101, C:A.103, C:K.105, C:K.159, C:V.188, E:K.61 Salt bridges: C:R.58, C:K.62, C:K.105, C:K.105, E:K.61 pi-Cation interactions: C:R.58 NAP.4: 24 residues within 4Å: Chain A: K.61 Chain D: G.32, T.34, G.35, S.36, F.37, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, L.143, S.144, T.145, K.159, Y.185, G.186, N.187, V.188 27 PLIP interactions: 25 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:Y.185, D:Y.185 Hydrogen bonds: D:G.32, D:T.34, D:T.34, D:T.34, D:S.36, D:F.37, D:S.57, D:R.58, D:D.59, D:K.62, D:D.81, D:D.81, D:V.82, D:A.101, D:A.103, D:K.105, D:K.159, D:V.188, A:K.61 Salt bridges: D:R.58, D:K.62, D:K.105, D:K.105, A:K.61 pi-Cation interactions: D:R.58 NAP.5: 24 residues within 4Å: Chain C: K.61 Chain E: G.32, T.34, G.35, S.36, F.37, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, L.143, S.144, T.145, K.159, Y.185, G.186, N.187, V.188 27 PLIP interactions: 25 interactions with chain E, 2 interactions with chain C Hydrophobic interactions: E:Y.185, E:Y.185 Hydrogen bonds: E:G.32, E:T.34, E:T.34, E:T.34, E:S.36, E:F.37, E:S.57, E:R.58, E:D.59, E:K.62, E:D.81, E:D.81, E:V.82, E:A.101, E:A.103, E:K.105, E:K.159, E:V.188, C:K.61 Salt bridges: E:R.58, E:K.62, E:K.105, E:K.105, C:K.61 pi-Cation interactions: E:R.58 NAP.6: 24 residues within 4Å: Chain B: K.61 Chain F: G.32, T.34, G.35, S.36, F.37, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, L.143, S.144, T.145, K.159, Y.185, G.186, N.187, V.188 27 PLIP interactions: 25 interactions with chain F, 2 interactions with chain B Hydrophobic interactions: F:Y.185, F:Y.185 Hydrogen bonds: F:G.32, F:T.34, F:T.34, F:T.34, F:S.36, F:F.37, F:S.57, F:R.58, F:D.59, F:K.62, F:D.81, F:D.81, F:V.82, F:A.101, F:A.103, F:K.105, F:K.159, F:V.188, B:K.61 Salt bridges: F:R.58, F:K.62, F:K.105, F:K.105, B:K.61 pi-Cation interactions: F:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyafusa, T. et al., Crystal structure of the capsular polysaccharide synthesizing protein CapE of Staphylococcus aureus. Biosci.Rep. (2013)

Release Date

2013-06-12

Peptides

CapE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

CapE

Related Entries With Identical Sequence