SMTL ID : 4g5h.1

Crystal structure of capsular polysaccharide synthesizing enzyme CapE from Staphylococcus aureus in complex with by-product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-hexamer

Ligands

6 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.32, T.34, G.35, S.36, F.37, G.38, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, T.120, L.143, S.144, T.145, K.159, Y.185, G.186, S.191 Chain D: K.61 Ligands: UD7.2, FMT.71 31 PLIP interactions: 29 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:Y.185 Hydrogen bonds: A:G.32, A:T.34, A:S.36, A:S.36, A:F.37, A:G.38, A:S.57, A:S.57, A:R.58, A:D.59, A:D.81, A:V.82, A:A.101, A:A.103, A:K.105, A:K.159, A:S.191, A:S.191, D:K.61 Water bridges: A:G.35, A:S.36, A:R.83, A:V.188, A:V.188 Salt bridges: A:R.58, A:K.62, A:K.105, A:K.105, D:K.61 pi-Cation interactions: A:R.58 NAP.19: 27 residues within 4Å: Chain B: G.32, T.34, G.35, S.36, F.37, G.38, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, T.120, L.143, S.144, T.145, K.159, Y.185, G.186, S.191 Chain F: K.61 Ligands: UD7.20, FMT.107 31 PLIP interactions: 29 interactions with chain B, 2 interactions with chain F Hydrophobic interactions: B:Y.185 Hydrogen bonds: B:G.32, B:T.34, B:S.36, B:S.36, B:F.37, B:G.38, B:S.57, B:S.57, B:R.58, B:D.59, B:D.81, B:V.82, B:A.101, B:A.103, B:K.105, B:K.159, B:S.191, B:S.191, F:K.61 Water bridges: B:G.35, B:S.36, B:R.83, B:V.188, B:V.188 Salt bridges: B:R.58, B:K.62, B:K.105, B:K.105, F:K.61 pi-Cation interactions: B:R.58 NAP.37: 27 residues within 4Å: Chain C: G.32, T.34, G.35, S.36, F.37, G.38, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, T.120, L.143, S.144, T.145, K.159, Y.185, G.186, S.191 Chain E: K.61 Ligands: UD7.38, FMT.89 31 PLIP interactions: 29 interactions with chain C, 2 interactions with chain E Hydrophobic interactions: C:Y.185 Hydrogen bonds: C:G.32, C:T.34, C:S.36, C:S.36, C:F.37, C:G.38, C:S.57, C:S.57, C:R.58, C:D.59, C:D.81, C:V.82, C:A.101, C:A.103, C:K.105, C:K.159, C:S.191, C:S.191, E:K.61 Water bridges: C:G.35, C:S.36, C:R.83, C:V.188, C:V.188 Salt bridges: C:R.58, C:K.62, C:K.105, C:K.105, E:K.61 pi-Cation interactions: C:R.58 NAP.55: 27 residues within 4Å: Chain A: K.61 Chain D: G.32, T.34, G.35, S.36, F.37, G.38, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, T.120, L.143, S.144, T.145, K.159, Y.185, G.186, S.191 Ligands: FMT.17, UD7.56 34 PLIP interactions: 30 interactions with chain D, 4 interactions with chain A Hydrophobic interactions: D:Y.185 Hydrogen bonds: D:G.32, D:T.34, D:S.36, D:S.36, D:F.37, D:G.38, D:S.57, D:S.57, D:R.58, D:D.59, D:D.81, D:D.81, D:V.82, D:A.101, D:A.103, D:K.105, D:K.159, D:S.191, D:S.191, A:K.61 Water bridges: D:G.35, D:S.36, D:R.83, D:V.188, D:V.188, A:E.60, A:E.60 Salt bridges: D:R.58, D:K.62, D:K.105, D:K.105, A:K.61 pi-Cation interactions: D:R.58 NAP.73: 27 residues within 4Å: Chain C: K.61 Chain E: G.32, T.34, G.35, S.36, F.37, G.38, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, T.120, L.143, S.144, T.145, K.159, Y.185, G.186, S.191 Ligands: FMT.53, UD7.74 34 PLIP interactions: 4 interactions with chain C, 30 interactions with chain E Hydrogen bonds: C:K.61, E:G.32, E:T.34, E:S.36, E:S.36, E:F.37, E:G.38, E:S.57, E:S.57, E:R.58, E:D.59, E:D.81, E:D.81, E:V.82, E:A.101, E:A.103, E:K.105, E:K.159, E:S.191, E:S.191 Water bridges: C:E.60, C:E.60, E:G.35, E:S.36, E:R.83, E:V.188, E:V.188 Salt bridges: C:K.61, E:R.58, E:K.62, E:K.105, E:K.105 Hydrophobic interactions: E:Y.185 pi-Cation interactions: E:R.58 NAP.91: 27 residues within 4Å: Chain B: K.61 Chain F: G.32, T.34, G.35, S.36, F.37, G.38, S.57, R.58, D.59, K.62, D.81, V.82, A.101, A.102, A.103, K.105, T.120, L.143, S.144, T.145, K.159, Y.185, G.186, S.191 Ligands: FMT.35, UD7.92 34 PLIP interactions: 4 interactions with chain B, 30 interactions with chain F Hydrogen bonds: B:K.61, F:G.32, F:T.34, F:S.36, F:S.36, F:F.37, F:G.38, F:S.57, F:S.57, F:R.58, F:D.59, F:D.81, F:D.81, F:V.82, F:A.101, F:A.103, F:K.105, F:K.159, F:S.191, F:S.191 Water bridges: B:E.60, B:E.60, F:G.35, F:S.36, F:R.83, F:V.188, F:V.188 Salt bridges: B:K.61, F:R.58, F:K.62, F:K.105, F:K.105 Hydrophobic interactions: F:Y.185 pi-Cation interactions: F:R.58

12 x UD7: [(2R,3R,4R,6R)-3-acetamido-6-methyl-4-oxidanyl-5-oxidanylidene-oxan-2-yl] [[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate(Non-covalent)

UD7.2: 21 residues within 4Å: Chain A: K.105, Q.106, V.107, P.108, K.147, N.187, S.194, V.195, L.198, F.199, T.210, I.211, T.212, M.216, R.218, V.252, R.275, E.278 Chain E: Y.314, V.315 Ligands: NAP.1 17 PLIP interactions: 1 interactions with chain E, 16 interactions with chain A Hydrophobic interactions: E:V.315, A:V.195, A:L.198 Hydrogen bonds: A:V.107, A:N.187, A:V.195, A:T.210, A:T.210, A:T.212, A:T.212, A:T.212, A:R.275 Water bridges: A:K.147, A:R.218 Salt bridges: A:K.147, A:K.147, A:R.275 UD7.3: 8 residues within 4Å: Chain A: Y.290, D.295, S.325, Y.326, E.327, Y.328, N.332, T.333 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.295, A:D.295, A:Y.326, A:Y.326, A:Y.326, A:Y.326, A:N.332 pi-Stacking: A:Y.290, A:Y.326 UD7.20: 21 residues within 4Å: Chain B: K.105, Q.106, V.107, P.108, K.147, N.187, S.194, V.195, L.198, F.199, T.210, I.211, T.212, M.216, R.218, V.252, R.275, E.278 Chain D: Y.314, V.315 Ligands: NAP.19 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:V.195, B:L.198, D:V.315 Hydrogen bonds: B:V.107, B:N.187, B:V.195, B:T.210, B:T.210, B:T.212, B:T.212, B:T.212, B:R.275 Water bridges: B:K.147, B:R.218 Salt bridges: B:K.147, B:K.147, B:R.275 UD7.21: 8 residues within 4Å: Chain B: Y.290, D.295, S.325, Y.326, E.327, Y.328, N.332, T.333 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.295, B:D.295, B:Y.326, B:Y.326, B:Y.326, B:Y.326, B:N.332 pi-Stacking: B:Y.290, B:Y.326 UD7.38: 21 residues within 4Å: Chain C: K.105, Q.106, V.107, P.108, K.147, N.187, S.194, V.195, L.198, F.199, T.210, I.211, T.212, M.216, R.218, V.252, R.275, E.278 Chain F: Y.314, V.315 Ligands: NAP.37 17 PLIP interactions: 16 interactions with chain C, 1 interactions with chain F Hydrophobic interactions: C:V.195, C:L.198, F:V.315 Hydrogen bonds: C:V.107, C:N.187, C:V.195, C:T.210, C:T.210, C:T.212, C:T.212, C:T.212, C:R.275 Water bridges: C:K.147, C:R.218 Salt bridges: C:K.147, C:K.147, C:R.275 UD7.39: 8 residues within 4Å: Chain C: Y.290, D.295, S.325, Y.326, E.327, Y.328, N.332, T.333 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:D.295, C:D.295, C:Y.326, C:Y.326, C:Y.326, C:Y.326, C:N.332 pi-Stacking: C:Y.290, C:Y.326 UD7.56: 21 residues within 4Å: Chain B: Y.314, V.315 Chain D: K.105, Q.106, V.107, P.108, K.147, N.187, S.194, V.195, L.198, F.199, T.210, I.211, T.212, M.216, R.218, V.252, R.275, E.278 Ligands: NAP.55 16 PLIP interactions: 1 interactions with chain B, 15 interactions with chain D Hydrophobic interactions: B:V.315, D:V.195, D:L.198 Hydrogen bonds: D:V.107, D:N.187, D:V.195, D:T.210, D:T.212, D:T.212, D:R.275, D:E.278 Water bridges: D:K.147, D:R.218 Salt bridges: D:K.147, D:K.147, D:R.275 UD7.57: 8 residues within 4Å: Chain D: Y.290, D.295, S.325, Y.326, E.327, Y.328, N.332, T.333 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:D.295, D:Y.326, D:Y.326, D:Y.326, D:Y.326, D:N.332 pi-Stacking: D:Y.290, D:Y.326 UD7.74: 21 residues within 4Å: Chain A: Y.314, V.315 Chain E: K.105, Q.106, V.107, P.108, K.147, N.187, S.194, V.195, L.198, F.199, T.210, I.211, T.212, M.216, R.218, V.252, R.275, E.278 Ligands: NAP.73 16 PLIP interactions: 1 interactions with chain A, 15 interactions with chain E Hydrophobic interactions: A:V.315, E:V.195, E:L.198 Hydrogen bonds: E:V.107, E:N.187, E:V.195, E:T.210, E:T.212, E:T.212, E:R.275, E:E.278 Water bridges: E:K.147, E:R.218 Salt bridges: E:K.147, E:K.147, E:R.275 UD7.75: 8 residues within 4Å: Chain E: Y.290, D.295, S.325, Y.326, E.327, Y.328, N.332, T.333 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:D.295, E:Y.326, E:Y.326, E:Y.326, E:Y.326, E:N.332 pi-Stacking: E:Y.290, E:Y.326 UD7.92: 21 residues within 4Å: Chain C: Y.314, V.315 Chain F: K.105, Q.106, V.107, P.108, K.147, N.187, S.194, V.195, L.198, F.199, T.210, I.211, T.212, M.216, R.218, V.252, R.275, E.278 Ligands: NAP.91 16 PLIP interactions: 15 interactions with chain F, 1 interactions with chain C Hydrophobic interactions: F:V.195, F:L.198, C:V.315 Hydrogen bonds: F:V.107, F:N.187, F:V.195, F:T.210, F:T.212, F:T.212, F:R.275, F:E.278 Water bridges: F:K.147, F:R.218 Salt bridges: F:K.147, F:K.147, F:R.275 UD7.93: 8 residues within 4Å: Chain F: Y.290, D.295, S.325, Y.326, E.327, Y.328, N.332, T.333 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:D.295, F:Y.326, F:Y.326, F:Y.326, F:Y.326, F:N.332 pi-Stacking: F:Y.290, F:Y.326

84 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: R.54, R.93, D.94 Chain B: N.172 Ligand excluded by PLIP FMT.5: 4 residues within 4Å: Chain A: R.83, I.123, N.127 Ligands: FMT.12 Ligand excluded by PLIP FMT.6: 6 residues within 4Å: Chain A: E.111 Chain E: K.164, E.288, Q.292, D.305, Y.314 Ligand excluded by PLIP FMT.7: 4 residues within 4Å: Chain A: N.310, Y.311, S.312 Chain C: R.67 Ligand excluded by PLIP FMT.8: 5 residues within 4Å: Chain A: Y.150, R.287 Chain E: K.279, K.280 Ligands: FMT.81 Ligand excluded by PLIP FMT.9: 3 residues within 4Å: Chain A: K.280, A.281 Ligands: FMT.80 Ligand excluded by PLIP FMT.10: 8 residues within 4Å: Chain A: L.220, M.221, D.225, Q.245, K.246, A.247, P.248, K.344 Ligand excluded by PLIP FMT.11: 5 residues within 4Å: Chain A: F.113, P.114, V.115, E.116 Chain E: A.168 Ligand excluded by PLIP FMT.12: 5 residues within 4Å: Chain A: S.85, N.127, Q.130 Chain C: Q.86 Ligands: FMT.5 Ligand excluded by PLIP FMT.13: 4 residues within 4Å: Chain A: E.89, S.131, H.134, Q.135 Ligand excluded by PLIP FMT.14: 4 residues within 4Å: Chain A: E.238, D.241, P.303, R.307 Ligand excluded by PLIP FMT.15: 3 residues within 4Å: Chain A: R.171, R.307 Ligands: NA.18 Ligand excluded by PLIP FMT.16: 4 residues within 4Å: Chain A: D.331, N.332, T.333, I.335 Ligand excluded by PLIP FMT.17: 6 residues within 4Å: Chain A: D.81 Chain D: R.58, D.81, R.83 Ligands: NAP.55, FMT.71 Ligand excluded by PLIP FMT.22: 4 residues within 4Å: Chain B: R.54, R.93, D.94 Chain C: N.172 Ligand excluded by PLIP FMT.23: 4 residues within 4Å: Chain B: R.83, I.123, N.127 Ligands: FMT.30 Ligand excluded by PLIP FMT.24: 6 residues within 4Å: Chain B: E.111 Chain D: K.164, E.288, Q.292, D.305, Y.314 Ligand excluded by PLIP FMT.25: 4 residues within 4Å: Chain A: R.67 Chain B: N.310, Y.311, S.312 Ligand excluded by PLIP FMT.26: 5 residues within 4Å: Chain B: Y.150, R.287 Chain D: K.279, K.280 Ligands: FMT.63 Ligand excluded by PLIP FMT.27: 3 residues within 4Å: Chain B: K.280, A.281 Ligands: FMT.62 Ligand excluded by PLIP FMT.28: 8 residues within 4Å: Chain B: L.220, M.221, D.225, Q.245, K.246, A.247, P.248, K.344 Ligand excluded by PLIP FMT.29: 5 residues within 4Å: Chain B: F.113, P.114, V.115, E.116 Chain D: A.168 Ligand excluded by PLIP FMT.30: 5 residues within 4Å: Chain A: Q.86 Chain B: S.85, N.127, Q.130 Ligands: FMT.23 Ligand excluded by PLIP FMT.31: 4 residues within 4Å: Chain B: E.89, S.131, H.134, Q.135 Ligand excluded by PLIP FMT.32: 4 residues within 4Å: Chain B: E.238, D.241, P.303, R.307 Ligand excluded by PLIP FMT.33: 3 residues within 4Å: Chain B: R.171, R.307 Ligands: NA.36 Ligand excluded by PLIP FMT.34: 4 residues within 4Å: Chain B: D.331, N.332, T.333, I.335 Ligand excluded by PLIP FMT.35: 6 residues within 4Å: Chain B: D.81 Chain F: R.58, D.81, R.83 Ligands: NAP.91, FMT.107 Ligand excluded by PLIP FMT.40: 4 residues within 4Å: Chain A: N.172 Chain C: R.54, R.93, D.94 Ligand excluded by PLIP FMT.41: 4 residues within 4Å: Chain C: R.83, I.123, N.127 Ligands: FMT.48 Ligand excluded by PLIP FMT.42: 6 residues within 4Å: Chain C: E.111 Chain F: K.164, E.288, Q.292, D.305, Y.314 Ligand excluded by PLIP FMT.43: 4 residues within 4Å: Chain B: R.67 Chain C: N.310, Y.311, S.312 Ligand excluded by PLIP FMT.44: 5 residues within 4Å: Chain C: Y.150, R.287 Chain F: K.279, K.280 Ligands: FMT.99 Ligand excluded by PLIP FMT.45: 3 residues within 4Å: Chain C: K.280, A.281 Ligands: FMT.98 Ligand excluded by PLIP FMT.46: 8 residues within 4Å: Chain C: L.220, M.221, D.225, Q.245, K.246, A.247, P.248, K.344 Ligand excluded by PLIP FMT.47: 5 residues within 4Å: Chain C: F.113, P.114, V.115, E.116 Chain F: A.168 Ligand excluded by PLIP FMT.48: 5 residues within 4Å: Chain B: Q.86 Chain C: S.85, N.127, Q.130 Ligands: FMT.41 Ligand excluded by PLIP FMT.49: 4 residues within 4Å: Chain C: E.89, S.131, H.134, Q.135 Ligand excluded by PLIP FMT.50: 4 residues within 4Å: Chain C: E.238, D.241, P.303, R.307 Ligand excluded by PLIP FMT.51: 3 residues within 4Å: Chain C: R.171, R.307 Ligands: NA.54 Ligand excluded by PLIP FMT.52: 4 residues within 4Å: Chain C: D.331, N.332, T.333, I.335 Ligand excluded by PLIP FMT.53: 6 residues within 4Å: Chain C: D.81 Chain E: R.58, D.81, R.83 Ligands: NAP.73, FMT.89 Ligand excluded by PLIP FMT.58: 4 residues within 4Å: Chain D: R.54, R.93, D.94 Chain E: N.172 Ligand excluded by PLIP FMT.59: 4 residues within 4Å: Chain D: R.83, I.123, N.127 Ligands: FMT.66 Ligand excluded by PLIP FMT.60: 6 residues within 4Å: Chain B: K.164, E.288, Q.292, D.305, Y.314 Chain D: E.111 Ligand excluded by PLIP FMT.61: 4 residues within 4Å: Chain D: N.310, Y.311, S.312 Chain F: R.67 Ligand excluded by PLIP FMT.62: 5 residues within 4Å: Chain B: K.279, K.280 Chain D: Y.150, R.287 Ligands: FMT.27 Ligand excluded by PLIP FMT.63: 3 residues within 4Å: Chain D: K.280, A.281 Ligands: FMT.26 Ligand excluded by PLIP FMT.64: 8 residues within 4Å: Chain D: L.220, M.221, D.225, Q.245, K.246, A.247, P.248, K.344 Ligand excluded by PLIP FMT.65: 5 residues within 4Å: Chain B: A.168 Chain D: F.113, P.114, V.115, E.116 Ligand excluded by PLIP FMT.66: 5 residues within 4Å: Chain D: S.85, N.127, Q.130 Chain F: Q.86 Ligands: FMT.59 Ligand excluded by PLIP FMT.67: 4 residues within 4Å: Chain D: E.89, S.131, H.134, Q.135 Ligand excluded by PLIP FMT.68: 4 residues within 4Å: Chain D: E.238, D.241, P.303, R.307 Ligand excluded by PLIP FMT.69: 3 residues within 4Å: Chain D: R.171, R.307 Ligands: NA.72 Ligand excluded by PLIP FMT.70: 4 residues within 4Å: Chain D: D.331, N.332, T.333, I.335 Ligand excluded by PLIP FMT.71: 6 residues within 4Å: Chain A: R.58, D.81, R.83 Chain D: D.81 Ligands: NAP.1, FMT.17 Ligand excluded by PLIP FMT.76: 4 residues within 4Å: Chain E: R.54, R.93, D.94 Chain F: N.172 Ligand excluded by PLIP FMT.77: 4 residues within 4Å: Chain E: R.83, I.123, N.127 Ligands: FMT.84 Ligand excluded by PLIP FMT.78: 6 residues within 4Å: Chain A: K.164, E.288, Q.292, D.305, Y.314 Chain E: E.111 Ligand excluded by PLIP FMT.79: 4 residues within 4Å: Chain D: R.67 Chain E: N.310, Y.311, S.312 Ligand excluded by PLIP FMT.80: 5 residues within 4Å: Chain A: K.279, K.280 Chain E: Y.150, R.287 Ligands: FMT.9 Ligand excluded by PLIP FMT.81: 3 residues within 4Å: Chain E: K.280, A.281 Ligands: FMT.8 Ligand excluded by PLIP FMT.82: 8 residues within 4Å: Chain E: L.220, M.221, D.225, Q.245, K.246, A.247, P.248, K.344 Ligand excluded by PLIP FMT.83: 5 residues within 4Å: Chain A: A.168 Chain E: F.113, P.114, V.115, E.116 Ligand excluded by PLIP FMT.84: 5 residues within 4Å: Chain D: Q.86 Chain E: S.85, N.127, Q.130 Ligands: FMT.77 Ligand excluded by PLIP FMT.85: 4 residues within 4Å: Chain E: E.89, S.131, H.134, Q.135 Ligand excluded by PLIP FMT.86: 4 residues within 4Å: Chain E: E.238, D.241, P.303, R.307 Ligand excluded by PLIP FMT.87: 3 residues within 4Å: Chain E: R.171, R.307 Ligands: NA.90 Ligand excluded by PLIP FMT.88: 4 residues within 4Å: Chain E: D.331, N.332, T.333, I.335 Ligand excluded by PLIP FMT.89: 6 residues within 4Å: Chain C: R.58, D.81, R.83 Chain E: D.81 Ligands: NAP.37, FMT.53 Ligand excluded by PLIP FMT.94: 4 residues within 4Å: Chain D: N.172 Chain F: R.54, R.93, D.94 Ligand excluded by PLIP FMT.95: 4 residues within 4Å: Chain F: R.83, I.123, N.127 Ligands: FMT.102 Ligand excluded by PLIP FMT.96: 6 residues within 4Å: Chain C: K.164, E.288, Q.292, D.305, Y.314 Chain F: E.111 Ligand excluded by PLIP FMT.97: 4 residues within 4Å: Chain E: R.67 Chain F: N.310, Y.311, S.312 Ligand excluded by PLIP FMT.98: 5 residues within 4Å: Chain C: K.279, K.280 Chain F: Y.150, R.287 Ligands: FMT.45 Ligand excluded by PLIP FMT.99: 3 residues within 4Å: Chain F: K.280, A.281 Ligands: FMT.44 Ligand excluded by PLIP FMT.100: 8 residues within 4Å: Chain F: L.220, M.221, D.225, Q.245, K.246, A.247, P.248, K.344 Ligand excluded by PLIP FMT.101: 5 residues within 4Å: Chain C: A.168 Chain F: F.113, P.114, V.115, E.116 Ligand excluded by PLIP FMT.102: 5 residues within 4Å: Chain E: Q.86 Chain F: S.85, N.127, Q.130 Ligands: FMT.95 Ligand excluded by PLIP FMT.103: 4 residues within 4Å: Chain F: E.89, S.131, H.134, Q.135 Ligand excluded by PLIP FMT.104: 4 residues within 4Å: Chain F: E.238, D.241, P.303, R.307 Ligand excluded by PLIP FMT.105: 3 residues within 4Å: Chain F: R.171, R.307 Ligands: NA.108 Ligand excluded by PLIP FMT.106: 4 residues within 4Å: Chain F: D.331, N.332, T.333, I.335 Ligand excluded by PLIP FMT.107: 6 residues within 4Å: Chain B: R.58, D.81, R.83 Chain F: D.81 Ligands: NAP.19, FMT.35 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.18: 4 residues within 4Å: Chain A: S.170, R.171, I.173 Ligands: FMT.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.171, A:I.173 NA.36: 4 residues within 4Å: Chain B: S.170, R.171, I.173 Ligands: FMT.33 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.173 Water bridges: B:I.173 NA.54: 4 residues within 4Å: Chain C: S.170, R.171, I.173 Ligands: FMT.51 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.171, C:I.173 NA.72: 4 residues within 4Å: Chain D: S.170, R.171, I.173 Ligands: FMT.69 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.171, D:I.173 NA.90: 4 residues within 4Å: Chain E: S.170, R.171, I.173 Ligands: FMT.87 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.171, E:I.173 NA.108: 4 residues within 4Å: Chain F: S.170, R.171, I.173 Ligands: FMT.105 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:I.173, F:I.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyafusa, T. et al., Dynamic elements govern the catalytic activity of CapE, a capsular polysaccharide-synthesizing enzyme from Staphylococcus aureus. Febs Lett. (2013)

Release Date

2013-08-28

Peptides

Capsular polysaccharide synthesis enzyme Cap8E: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsular polysaccharide synthesis enzyme Cap8E

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