SMTL ID : 3vvn.1

Crystal structure of MATE in the straight conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

12 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 4 residues within 4Å: Chain A: I.29, N.167, M.170 Ligands: OLC.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.29 Hydrogen bonds: A:N.167 OLC.2: 10 residues within 4Å: Chain A: F.60, P.61, M.64, G.65, A.68, L.69, S.250, L.251, L.254, S.257 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.64, A:A.68, A:L.69, A:L.251, A:L.254 OLC.3: 5 residues within 4Å: Chain A: G.65, L.107, I.111, T.114, M.115 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.107, A:I.111 OLC.4: 5 residues within 4Å: Chain A: H.99, L.103, I.106, F.232, L.239 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.103, A:F.232 OLC.5: 9 residues within 4Å: Chain A: L.101, I.102, F.148, F.152, S.210, L.211, A.214, R.221, I.227 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.101, A:I.102, A:F.148, A:F.152, A:L.211, A:A.214, A:I.227 OLC.6: 8 residues within 4Å: Chain A: M.28, S.32, T.35, L.288, V.291, P.292, I.326, I.330 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.291, A:P.292, A:I.326 OLC.7: 11 residues within 4Å: Chain A: M.27, M.31, Q.34, N.153, N.154, N.157, A.172, M.173, T.209, I.213 Ligands: OLC.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.153, A:N.157, A:A.172, A:T.209, A:I.213 OLC.8: 11 residues within 4Å: Chain A: S.252, M.256, M.287, I.290, F.372, M.380, Q.387, T.399, R.402, Q.407, N.433 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.290, A:F.372 OLC.9: 12 residues within 4Å: Chain A: Y.37, I.67, I.150, N.153, N.154, G.176, S.177, N.180, S.205, M.206, T.209 Ligands: OLC.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.37, A:I.67, A:I.150 OLC.10: 2 residues within 4Å: Chain A: I.106, I.113 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.106, A:I.113 OLC.11: 2 residues within 4Å: Chain A: L.36 Ligands: OLC.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.36 OLC.12: 4 residues within 4Å: Chain A: P.26, I.29, N.167, M.170 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.26, A:I.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature (2013)

Release Date

2013-04-03

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Putative uncharacterized protein

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