SMTL ID : 3vvs.1

Crystal structure of MATE in complex with MaD3S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

12 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 6 residues within 4Å: Chain A: P.61, V.62, G.65, I.111, M.115 Ligands: OLC.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.61, A:I.111, A:I.111 OLC.2: 5 residues within 4Å: Chain A: H.99, L.103, I.106, P.234, L.239 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.106, A:P.234, A:L.239 OLC.3: 10 residues within 4Å: Chain A: L.101, F.148, F.152, S.210, L.211, F.218, R.221, I.227, T.228, L.229 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.101, A:F.152, A:L.211, A:F.218, A:I.227, A:L.229 Hydrogen bonds: A:T.228, A:L.229 OLC.4: 5 residues within 4Å: Chain A: L.105, V.109, L.116, R.141, A.145 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.105, A:V.109, A:L.116, A:A.145 OLC.5: 4 residues within 4Å: Chain A: A.145, Y.200, L.203, L.204 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.200, A:L.203, A:L.203, A:L.204 OLC.6: 8 residues within 4Å: Chain A: M.64, G.65, A.68, L.69, S.250, L.254, S.257 Ligands: OLC.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.68, A:L.69, A:L.254 OLC.7: 4 residues within 4Å: Chain A: R.141, A.145, Y.200, L.203 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.145, A:L.203 OLC.8: 3 residues within 4Å: Chain A: L.179, F.212 Ligands: OLC.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.179, A:F.212 OLC.9: 7 residues within 4Å: Chain A: R.168, F.212, Y.215, W.216, K.220, D.222 Ligands: OLC.8 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.212, A:F.212, A:Y.215, A:Y.215 Hydrogen bonds: A:R.168 OLC.10: 12 residues within 4Å: Chain A: K.4, T.6, K.7, G.8, K.90, G.164, D.165, A.166, N.167, D.222, T.223, Y.224 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.6, A:D.165, A:N.167, A:Y.224 OLC.11: 3 residues within 4Å: Chain A: Y.322, M.329, A.333 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:M.329, A:A.333 OLC.12: 4 residues within 4Å: Chain A: R.244, L.247, L.251, E.393 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.244, A:L.247, A:E.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature (2013)

Release Date

2013-04-03

Peptides

Putative uncharacterized protein: A
macrocyclic peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Putative uncharacterized protein

macrocyclic peptide

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