SMTL ID : 3vym.1

Dimeric Hydrogenobacter thermophilus cytochrome c552

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HEC: HEME C(Covalent)

HEC.1: 26 residues within 4Å: Chain A: G.9, C.10, C.13, H.14 Chain B: V.21, G.22, P.23, Y.25, Y.32, Y.41, L.42, K.45, I.46, G.50, S.51, G.52, V.53, W.54, G.55, V.57, P.58, M.59, P.60, Q.62, L.72, I.76 14 PLIP interactions: 1 interactions with chain A, 13 interactions with chain B, Metal complexes: A:H.14 Hydrophobic interactions: B:Y.25, B:L.42, B:K.45, B:I.46, B:I.46, B:L.72, B:I.76 Hydrogen bonds: B:Y.32, B:G.52, B:V.53, B:W.54, B:G.55, B:V.57 HEC.2: 26 residues within 4Å: Chain A: V.21, G.22, P.23, Y.25, Y.32, Y.41, L.42, K.45, I.46, G.50, S.51, G.52, V.53, W.54, G.55, V.57, P.58, M.59, P.60, Q.62, L.72, I.76 Chain B: G.9, C.10, C.13, H.14 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:Y.25, A:L.42, A:K.45, A:I.46, A:I.46, A:L.72, A:I.76 Hydrogen bonds: A:Y.41, A:G.52, A:V.53, A:W.54, A:G.55, A:V.57 Metal complexes: B:H.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, Y. et al., Domain Swapping of the Heme and N-Terminal alpha-Helix in Hydrogenobacter thermophilus Cytochrome c(552) Dimer. Biochemistry (2012)

Release Date

2012-11-07

Peptides

Cytochrome c-552: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cytochrome c-552

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