SMTL ID : 4zid.1

Dimeric Hydrogenobacter thermophilus cytochrome c552 obtained from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x HEC: HEME C(Covalent)

HEC.1: 26 residues within 4Å: Chain A: G.9, C.10, C.13, H.14 Chain B: V.21, G.22, P.23, Y.25, V.28, Y.32, Y.41, L.42, K.45, I.46, G.50, S.51, G.52, V.53, W.54, G.55, V.57, P.58, M.59, P.60, Q.62, I.76 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: B:V.21, B:P.23, B:Y.25, B:V.28, B:L.42, B:I.46, B:I.46, B:I.46, B:Q.62 Hydrogen bonds: B:Y.32, B:G.52, B:V.53, B:W.54, B:G.55 Water bridges: B:S.51, B:G.55, B:V.57 Metal complexes: A:H.14 HEC.2: 26 residues within 4Å: Chain A: V.21, G.22, P.23, Y.25, V.28, Y.32, Y.41, L.42, K.45, I.46, G.50, S.51, G.52, V.53, W.54, G.55, V.57, P.58, M.59, P.60, Q.62, I.76 Chain B: G.9, C.10, C.13, H.14 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:V.21, A:P.23, A:Y.25, A:V.28, A:L.42, A:I.46, A:I.46, A:I.46, A:Q.62 Hydrogen bonds: A:Y.41, A:G.52, A:V.53, A:W.54, A:G.55 Water bridges: A:S.51, A:G.55, A:V.57 Metal complexes: B:H.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, Y. et al., Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells. Sci Rep (2016)

Release Date

2016-02-10

Peptides

Cytochrome c-552: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cytochrome c-552

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