SMTL ID : 3w0u.1

human Glyoxalase I with an N-hydroxypyridone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.37, E.103 Chain B: H.130, E.176 Ligands: HPW.4 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.130, B:E.176, A:E.103, A:E.103 ZN.2: 5 residues within 4Å: Chain A: H.130, E.176 Chain B: Q.37, E.103 Ligands: HPW.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.130, A:E.176, B:E.103, B:E.103

2 x HPW: N-[3-(1-Hydroxy-6-oxo-4-phenyl-1,6-dihydro-pyridin-2-yl)-5-methanesulfonylamino-phenyl]-methanesulfonamide(Non-covalent)

HPW.3: 18 residues within 4Å: Chain A: H.130, K.154, K.160, M.161, L.164, F.166, E.176, M.183 Chain B: Q.37, M.39, C.64, M.69, F.71, L.73, F.75, E.103, T.105 Ligands: ZN.2 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.73, B:F.75 Hydrogen bonds: B:Q.37, A:K.160, A:M.161 Water bridges: B:R.41 pi-Stacking: B:F.66, A:F.166 HPW.4: 20 residues within 4Å: Chain A: Q.37, M.39, C.64, F.66, M.69, F.71, L.73, F.75, I.92, E.103, T.105 Chain B: H.130, K.154, M.161, L.164, E.176, M.183, A.184, L.186 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.73, A:I.92, B:L.186 Water bridges: A:R.41 pi-Stacking: A:F.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koyano, H. et al., N-Hydroxypyridone-based glyoxalase I inhibitors mimicking binding interactions of the substrate. to be published

Release Date

2013-11-06

Peptides

Lactoylglutathione lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lactoylglutathione lyase

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