SMTL ID : 3wdl.1 (1 other biounit)

Crystal structure of 4-phosphopantoate-beta-alanine ligase complexed with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: A.36, H.37, R.39, L.83, L.161, G.164, D.181, L.182, N.183, S.186, R.187, S.188, D.198, N.199, I.200 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.37, A:G.164, A:L.182, A:N.183, A:R.187, A:S.188, A:N.199, A:I.200 Salt bridges: A:R.39, A:R.39 ATP.2: 21 residues within 4Å: Chain A: R.17, Y.45 Chain B: A.36, H.37, R.39, G.40, L.83, L.161, E.162, D.163, G.164, D.181, L.182, N.183, S.186, R.187, S.188, D.198, N.199, I.200 Ligands: MG.3 27 PLIP interactions: 18 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:R.39, B:G.164, B:L.182, B:N.183, B:N.183, B:R.187, B:S.188, B:N.199, B:I.200, A:Y.45, A:Y.45 Water bridges: B:H.37, B:R.39, B:S.186, B:S.186, B:R.187, B:R.187, A:R.17, A:R.17, A:R.17, A:R.17, A:R.17 Salt bridges: B:R.39, B:R.39, B:R.187, A:R.17, A:R.17

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: R.17 Chain B: D.163 Ligands: ATP.2 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.163, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kishimoto, A. et al., Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis. Proteins (2014)

Release Date

2014-04-02

Peptides

4-phosphopantoate--beta-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-phosphopantoate--beta-alanine ligase

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