SMTL ID : 3wfg.1

Mineralocorticoid receptor ligand-binding domain with compuond 2e

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x WFG: 6-[(2S)-4-(4-fluorophenyl)-2-methyl-5-oxo-2,5-dihydrofuran-3-yl]-2H-1,4-benzoxazin-3(4H)-one(Non-covalent)

WFG.1: 20 residues within 4Å: Chain A: L.57, L.60, N.61, A.64, W.97, M.98, L.101, S.102, L.105, F.120, M.136, L.139, C.140, M.143, L.229, F.232, C.233, T.236, V.245, F.247 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.60, A:A.64, A:W.97, A:L.101, A:L.105, A:L.229, A:L.229 Hydrogen bonds: A:N.61, A:N.61, A:T.236 pi-Stacking: A:F.120 Halogen bonds: A:L.139

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: D.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.175 EDO.3: 5 residues within 4Å: Chain A: S.240, H.241, K.244, V.245, E.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.241 Water bridges: A:E.246 EDO.4: 6 residues within 4Å: Chain A: I.90, I.93, Q.94, M.250, E.253, I.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.94 EDO.5: 4 residues within 4Å: Chain A: F.237, S.240, H.241, F.247 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.240, A:F.247 EDO.6: 8 residues within 4Å: Chain A: Q.116, F.117, L.118, F.126, N.127, E.128, M.131, H.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.128, A:H.144 EDO.7: 5 residues within 4Å: Chain A: N.35, I.36, K.73, W.74, V.77 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.74 EDO.8: 6 residues within 4Å: Chain A: T.171, H.223, V.226, S.227, V.267, P.269 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.223 Water bridges: A:S.99 EDO.9: 6 residues within 4Å: Chain A: A.135, M.136, Y.137, E.138, L.139, F.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.138, A:L.139 EDO.10: 6 residues within 4Å: Chain A: T.156, E.159, M.197, V.198, C.201, N.204 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.156, A:T.156, A:N.204 EDO.11: 8 residues within 4Å: Chain A: Y.45, D.46, K.49, P.50, D.51, N.55, L.56, T.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.46, A:D.46, A:N.55, A:T.59 EDO.12: 4 residues within 4Å: Chain A: I.90, Q.94, D.257, K.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.94, A:K.261 Water bridges: A:T.91 EDO.13: 4 residues within 4Å: Chain A: P.29, N.189, Y.190, E.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.79, A:N.189 Water bridges: A:N.189 EDO.14: 4 residues within 4Å: Chain A: T.91, P.173, K.261, N.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.91, A:K.261 Water bridges: A:N.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hasui, T. et al., Design, synthesis, and structure-activity relationships of dihydrofuran-2-one and dihydropyrrol-2-one derivatives as novel benzoxazin-3-one-based mineralocorticoid receptor antagonists. Bioorg.Med.Chem. (2013)

Release Date

2013-08-21

Peptides

Mineralocorticoid receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mineralocorticoid receptor

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