SMTL ID : 3wjo.1

Crystal structure of Octaprenyl Pyrophosphate synthase from Escherichia coli with isopentenyl pyrophosphate (IPP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

IPE.1: 6 residues within 4Å: Chain A: L.95, D.98, D.102, R.107, K.184 Ligands: IPE.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.98, A:R.107 Salt bridges: A:K.184, A:K.184 IPE.2: 10 residues within 4Å: Chain A: G.58, K.59, R.62, H.91, L.95, K.184, T.185, F.221, Q.222 Ligands: IPE.1 8 PLIP interactions: 8 interactions with chain A Water bridges: A:G.58, A:G.58, A:K.59 Salt bridges: A:K.59, A:K.59, A:R.62, A:H.91, A:H.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, X. et al., Crystal structures of ligand-bound octaprenyl pyrophosphate synthase from Escherichia coli reveal the catalytic and chain-length determining mechanisms. Proteins (2015)

Release Date

2014-06-18

Peptides

Octaprenyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Octaprenyl diphosphate synthase

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