SMTL ID : 3wsy.1

SorLA Vps10p domain in complex with its own propeptide fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.74, S.76, Y.102 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.102 Hydrogen bonds: A:S.76 NAG.2: 6 residues within 4Å: Chain A: S.282, N.284, G.311, G.312, S.315, D.316 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.315, A:S.315 NAG.3: 2 residues within 4Å: Chain A: N.346, R.355 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.355 NAG.4: 4 residues within 4Å: Chain A: V.512, N.532, T.534, D.535 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.512 Hydrogen bonds: A:N.532, A:T.534, A:D.535 NAG.5: 4 residues within 4Å: Chain A: V.588, S.589, N.590, T.651 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.590

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitago, Y. et al., Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-02-04

Peptides

Sortilin-related receptor: A
peptide from Sortilin-related receptor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Sortilin-related receptor

peptide from Sortilin-related receptor

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