SMTL ID : 3wsz.1

SorLA Vps10p domain in complex with Abeta-derived peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.70, N.74, S.76, Y.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.76, A:S.76 NAG.2: 1 residues within 4Å: Chain A: N.346 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.346 NAG.3: 5 residues within 4Å: Chain A: K.7, Y.9, N.532, T.534, D.535 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.532, A:T.534, A:D.535 NAG.4: 1 residues within 4Å: Chain A: N.590 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitago, Y. et al., Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-02-04

Peptides

Sortilin-related receptor: A
10-mer peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Sortilin-related receptor

10-mer peptide

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